barSeed - Barley Seed Development Database

Probe CUST_36056_PI390587928

Source Contig U35_1546

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36056_PI390587928	Hv_44K_v2	ATCCCATTTTGTGGACGCTTCTTCGTTTGGGATAAAACAGACGAATATCCCGGTCCCAAA	1303	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.546	2.361	1.449	0.940	0.466	0.549
Raw	146.922	338.125	184.576	182.499	32.327	41.476

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_53487.1	1008	6e-21	909 - 964	98	55 / 56	plus
Harvest35	U35_1546	1377	3e-25	1304 - 1363	100	60 / 60	plus

Contig Sequence (1377 bp)

>U35_1546 1377 Hv_44K_v2
GGAATTCGGCCGAGGGAGGAGCAGGAGCCTCGGCTGCCCACTGGAGGAGCACAAGCGGGT
GTCGCTAGTGGCGGGTGCGGGTGCGCGTGCAGTCAGGAAGAGGGGACGAGAGAGAGGAGG
GGAGAGGAGCCAACCCCGCCGCCACGGCTTCCGCGTGCTAGGAAGACGAAGAAGAGTAGC
AGCAGCAGGGAGAGGGAGGCCGCGATGGAGGTCGGCTTCTTGGGGCTGGGCATCATGGGT
AAGGCAATGGCGGCCAACCTCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACCGGACC
CTCTCCAAGTGCGACGAGCTCGTCGCGATGGGCGCCGCCGTCGGGGACACGCCGGCGTCC
GTCGTGGCCAAGTGCAAGTACACCATCGCCATGCTCTCCGATCCCAGCGCCGCGCTATCT
GTTGTTTTCGACAAGGATGGTGTGCTCGAGCAAATCGGGGAGGGCAAGGGCTACGTGGAC
ATGTCCACTGTTGATGCTGCAACTTCTTGCAAGATAAGCGAGGCGGTTAAACAAAAGGGC
GGAGCTTTTGTTGAAGCTCCAGTTTCAGGGAGCAAGAAGCCAGCTGAAGATGGCCAATTG
GTCATTCTTGCTGCAGGCGACAAGGCACTATATGATGACATGGTCCCTGCATTTGACATA
CTTGGGAAGAAGTCGTTCTTTCTGGGGGAGATGGGAAATGGAGCAAAGATGAAACTGGTG
GTCAACATGATCATGGGAAGTATGATGAATGCTTTCTCCGAGGGACTCTGTTTGGCTGAC
AAAAGTGGGTTGAGCCCCCAGACGCTTCTTGATGTCCTGGATCTCGGTGCCATCGCAAAT
CCGATGTTCAAGATGAAAGGGCCTTCGATGCTACAGGGCAGCTACAATCCAGCATTTCCC
CTCAAACATCAGCAGAAGGATATGAGGCTGGCTCTGTCATTGGGAGATGAAAATGCCGTC
TCCATGCCAGTCGCAGCTGCTGCTAATGAGGCATTCAAGAAAGCAAGAAGCTTGGGACTT
GGCGACCTGGATTTTTCTGCGGTGCACGAGGTGCTGAAAGGCACAGGTGGTTCAGGCTAA
AGCGTGACCGGGGGCTGAATGCTTAAAACCACGTGCCATGGGCATGCAGATATTCTTGTA
GTTCCTCCTACCCATGTGGCTTATCATCGTACTATTGATGTGTACGTACATTCGAATTAT
TGGCTTGGGCATGAAGGTATCTGTGGGATTTGGGTCAAAAAAAAAAAAAAAAATCGGCGT
CCTGGACACCGGAGACCGCTGCTCAGGCTAAGTCCACCGCGCGATCCCATTTTGTGGACG
CTTCTTCGTTTGGGATAAAACAGACGAATATCCCGGTCCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1546 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g35500.1	294	4e-178	protein\|NAD binding domain of 6-phosphogluconate dehydrogenase containing protein, expressed
Brachypodium v1_2	Bradi3g46080.1	294	4e-177
Arabidopsis v10	AT3G25530.1	289	9e-151	\| Symbols: GHBDH, ATGHBDH, GLYR1, GR1 \| glyoxylate reductase 1 \| chr3:9271949-9273514 REVERSE LENGTH=289