barSeed - Barley Seed Development Database

Probe CUST_36048_PI390587928

Source Contig U35_1554

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36048_PI390587928	Hv_44K_v2	GGTACCTTATCAGGCGAACTGCTAGTATGGTTTATGAGTATATGTTTATATCTGTCAAAA	1579	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55951.1	1408	3e-22	2 - 57	100	56 / 56	minus	ABC04394 ABC38333
MLOC	MLOC_55951.2	1428	3e-22	2 - 57	100	56 / 56	minus	ABC04394 ABC38333
JLOC1	JLOC1_36134.2	1623	1e-22	1366 - 1421	100	56 / 56	plus
JLOC1	JLOC1_36134.1	1520	1e-22	1263 - 1318	100	56 / 56	plus
Harvest21	ABC04394	3166	1e-23	3093 - 3153	98	60 / 61	plus	ABC04394
Harvest21	ABC38333	414	5e-23	68 - 123	100	56 / 56	minus	ABC38333
Harvest21	ABC04393	507	8e-21	18 - 69	100	52 / 52	minus
Harvest35	U35_1554	1720	3e-25	1580 - 1639	100	60 / 60	plus

Contig Sequence (1720 bp)

>U35_1554 1720 Hv_44K_v2
GTGACACCGATTGTTGGGTCTCGCTTCAAGTCCACCGTCAAACATAACTATGATCTATGC
TGTGCTTGTTTCTATCGCATGGGCAATGAGGCTGAATATACCAGAATGGACAAGCCGCTC
TCAGATAAGAGGTTCCTCCAACTTGACTGCCGTTTTGTCAAGGATCTCACTGTCCCTGAT
GGAACACGAATGGCTCCATCAACTCCATTTCGTAAGATTTGGTCCATGCGGAACAATGGA
ACTATCGTATGGCCTTATGGAACCCACCTTGCCTGGGTTGGTGGAGATGAATTTGCTCGC
CAAAGCTCAGTGAAATTAGCGGTTCCAGAGGCTGGTTTCCCCTTAGATGGAGAAATTGAT
GTTTATGTTGACTTTGTTTCACCTGCGAAACCTGGTAGGTACATATCGTACTGGAGACTA
ACATCGCCGGACCTACAGAAATTTGGTCAACAAGTTTGGGTTCTTATCGAGGTGGAACAG
CCTGTAAGAGCCAGTGGTGACAACCAAACTGCTGCAATAGACTTGAACTTGCCTGCAGAC
AGCAACCCCACAACATTGAGGCCTTCCATTGTGCAGCGCCGCCCTCTGAACTTCTTGAAC
TTGCCTGCAGAAGGCAGCACTGCAACCTGGACCACAGATTCTGCATCTGACAATGACGAG
GACGGCGTATCTCTGTGTGATGTGATTGCCACGCTGGGACGAAAGGGATCCAAAGCGGTT
GGAAGTGTTGTGCCCCCTGCACCGGCAGCACATGAACCAGTTCATGTACCCATGGCTTAT
CCCCAGGCAGAACCAGTTCAAGTGCCCATCGCTTATCCCCAGGCAGAACCAGTTCAAGTG
CCCATCGCTTATCCCCAGGCAGCAGATGAACCAGTTCAAGCACCAGTCGTTTATTCCCAG
GCAGCAGATGAACCAGTTCAAGTACCCGTTGCTTATCCCCAGGCCTCATCTGCTGAAGCT
CTAGGGATGCCTGCTGGTGTGCCTGCACCTGAAGCCGCACCACTGATGGAACACATCAGT
ATGCCAGAACCTCTACCTGCAGCTATTCTTGACAATTCACATGTTGCTCCTGTTAGCATG
CCTTTGCCTGATGAAACCATCAACAACGACATGGAGGAGAACCTTCTGAGGGAACTGGTG
GACATGGGCTTCAGGCAGGTTGACCTGAACAAGGAGGTGCTTCGGCAGAATGAGTATGAT
CTCCAGAAGTCGGTGGATGACCTGTGCGGCTTCCATGAATGGGATCCGCTCCTTGTGGAG
CTGAAGGAACTGATCTAAAGAAGTGGTCGAGCAAGAACCATGAAGTTCCATGAAGTGTGT
GGTGATGGATCTTCTGTCCATAGAGAAGGAGCGGTGATGGCCTCCTGCGCTCGTCTGCTG
GAGCGCCGCCGCCTTGTAGTAACCTAGATATAGATAAAGTAGTAGTATATAATGTAATGC
GGGAATAACCAGACGAACTGAAGTGATGCCGCATAATGCAGTGCACTGCAGCCGCAGTAG
TGGTAGCAGACAGTAAGCAGGACCATAATAGTCTGGCTCTCCGGTGACTTACCGCTCGTG
TTTGCCTTTCGTGTAAGCAGGTACCTTATCAGGCGAACTGCTAGTATGGTTTATGAGTAT
ATGTTTATATCTGTCAAAAAAAAAAAAAAAAATGCTTCTCAATCAGATGGTTCCTTTGCT
CTTTCAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1554 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g40090.1	882	4e-92	protein\|zinc finger, ZZ type family protein, expressed
Brachypodium v1_2	Bradi5g13400.3	875	1e-130
Arabidopsis v10	None