barSeed - Barley Seed Development Database

Probe CUST_36047_PI390587928

Source Contig U35_1555

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36047_PI390587928	Hv_44K_v2	ATACAGTGGGTATGGTATCCCACAGCAGTCGATTCATAAATGGGTAGAATGTGATGGCTG	1422	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.441	0.634	2.242	2.431	1.166	0.923
Raw	16.537	36.441	115.227	186.132	33.358	28.549

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354950	3076	2e-24	1355 - 1414	100	60 / 60	plus	ABC04394 ABC38333
MLOC	MLOC_44021.1	1824	2e-24	1380 - 1439	100	60 / 60	plus	ABC04394
MLOC	MLOC_44021.2	1794	2e-24	1380 - 1439	100	60 / 60	plus	ABC04394
JLOC1	JLOC1_28489.2	1817	8e-25	1378 - 1437	100	60 / 60	plus
JLOC1	JLOC1_28489.1	1787	8e-25	1378 - 1437	100	60 / 60	plus
Harvest21	ABC04394	3166	3e-25	1420 - 1479	100	60 / 60	plus	ABC04394
Harvest35	U35_1555	1951	3e-25	1423 - 1482	100	60 / 60	plus

Contig Sequence (1951 bp)

>U35_1555 1951 Hv_44K_v2
GGGAACGGCTCGATAAAAGAGGGGCTTGAGCGGCGAGGCCCTGCCCTCTTCTTCTTCTTC
TTCTCCACCACGCCACACCCCCACCCCCACCGCCGACGCACTGCCTCCTCCCCCAGCCCC
GGCACTGTGCAGCGCATCGCCGAGGCTTGCAGGGGCTGCGCGGAGGCCCCCGCTGCCGCG
GACTCGCGCCATGATGCCTCAACGGGGCGCCCCGCCGTCGCTCCGCGGCCCCGTGCCGCT
CGGCCGCCGGCCCCGGGATCTCGTCATCAAGGTCAAATATGGCGGCACTCTCAAGCGGTT
CGGTGCTTCTGTGAATGGTTCAAACTTGGATCATAATCTTGCTGCCCTTCGGTTGAAGAT
TGCAAATGCTTTTAAGTTCAGTCCTGATGATGAATTGATTCTCACATATACTGATGAGGA
TGGAGATGTTGTCATGCTGGATGATGATGATGATTTACGTGATGCAGCTGTTAGTCAGGA
GCTGAACCCTCTTAGGATTGATGTCCAGTTGAAAAGCAGCAGTGCTGGGGCACCTCAGCC
TAACCAGCAGGTATTGAATTCCCGGTCTAAGATGTCTGCAGCTATGGAAGATCAACTAGC
TCAGGTGAAATCAGCTATTGATGAAGCGTTGAAGTTTGTACCAGAGCAAGTTCCTGCTGT
CCTTGCTAAACTATCGCATGAGCTGCGCTCTAAAGCTGCATCATCGGCATCACCGGTGCA
TGAGTTGCTGGATTGTATTGCTAAACTGGTAACACCCAAGAGCGGTATGCAACCTACCAG
GGGTCTCTCTGATAGTTCGTCTGGCTCCTCTAATGGTAATCTACAAACAGTGAGAGACAT
AAAAAATAATCATGCATCTGAATCTGCAACAGTTTCAGCTTCACATTCGCAACATGCTAA
ATCATCTGGAGCACTTGGTCTTAAGAGTGTGCTAGTTGAGAAGACCAATGCTCAAGTTCA
ACAAGCACCAGGCTGTACGTCAACTGGGGTTCCATCTGTTTTAGTTGGTTCTGGTGGAAA
ACTCTGGTATCATAAGAAAAGAACTGATGCCCTGAGTAAGGGGAAATCACATGCCCAAAG
TATTGGGAAACCTGTCATATCTTCTTCCGTGCCACCTGTTCCTTCATTTGCTCTTGGTGG
CTCTACTCTTGGTTCTGCTAATGGGTATATGCCCTTTGGGTCTGTCGGAAAGATCAACGG
TGATTCAAGTTCAGCCTTCCCTCCCCCCAGAGGCCCTCCGATTAGTTCAATTCCAGCCTT
TGAAACTAGCCCTAGACTTCCCTCTTATTGTCCAGTTCCAACCCATGGTTTGCAGAAGGC
ATTCCCTCCTCCACCTGCACATGACTACAATCAGTTCAGGTTCAGTAGGCCTTCATCAGT
TAATCCATATGGAATTTATCAAGATCCCTACTCATTTGGTTCATACAGTGGGTATGGTAT
CCCACAGCAGTCGATTCATAAATGGGTAGAATGTGATGGCTGCGGGGTGACACCGATTGT
TGGGTCTCGCTTCAAGTCCACCGTCAAACATAACTATGATCTATGCTGTGCTTGTTTCTA
TCGCATGGGCAATGAGGCTGAATATACCAGAATGGACAAGCCGCTCTCAGTAAGTGAAAG
ATTGAGAAACCTGAATAAGGATAAGAGGTTCCTCCAACTTGACTGCCGTTTTGTCAAGGA
TCTCACTGTCCCTGATGGAACACGAATGGCTCCATCAACTCCATTTCGTAAGATTTGGTC
CATGCGGAACAATGGAACTATCGTATGGCCTTATGGAACCCACCTTGCCTGGGTTGGTGG
AGATGAATTTGCTCGCCAAAGCTCAGTGAAATTAGCGGTTCCAGAGGCTGGTTTCCCCTT
AGATGGAGAAATTGATGTTTATGTTGACTTTGTTTCACCTGCGAAACCTGGTAGGTACAT
ATCGTACTGGAGACTAACATCGCCGGACCTA

Homology of Contig U35_1555 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g40090.1	882	2e-142	protein\|zinc finger, ZZ type family protein, expressed
Brachypodium v1_2	Bradi5g13400.2	885	1e-177
Arabidopsis v10	None