barSeed - Barley Seed Development Database

Probe CUST_36034_PI390587928

Source Contig U35_29100

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36034_PI390587928	Hv_44K_v2	TATGGGGTCTTTGATGGCCATGGTGGAAAAGATGCTGCACAGTATGTTCGCGATAATTTG	547	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56775.1	1949	7e-23	402 - 461	98	59 / 60	plus	ABC06438 ABC06439
JLOC1	JLOC1_36750.2	2340	4e-23	367 - 426	98	59 / 60	plus
JLOC1	JLOC1_36750.1	2057	4e-23	421 - 480	98	59 / 60	plus
Harvest21	ABC28279	631	3e-25	548 - 607	100	60 / 60	plus
Harvest21	ABC06436	953	3e-25	570 - 629	100	60 / 60	plus
Harvest35	U35_29100	631	3e-25	548 - 607	100	60 / 60	plus
Harvest35	U35_16891	1785	3e-25	572 - 631	100	60 / 60	plus
Harvest35	U35_16893	615	2e-21	563 - 615	100	53 / 53	plus

Contig Sequence (631 bp)

>U35_29100 631 Hv_44K_v2
GAGAGCACAACGCAAAGAAAACCGCAGCGAATCCCACACATCCTCCGCCTGCCATCTCCA
ACCCCCGATCAGGCTGGTATTCCGGCGAACCCTCCACTCGGACTCCAACCCGCCCCGGTC
TCGGCCGCGTCCCACTCCCCCCCTTCAACCCCTCTTCGTCGGAGCCAGAGGTCCCCTTCG
GCGGCAGTTCGAGCCGAATCGCTCCTTCTCCCTCGTCGTCAGGCACAGCAACAGAGAGAC
AGAGCTCACCGGCGGCGGCGGCGGCGAACCGGACATGTGCGTGGAGGGATTCGAGGACGC
GCAGATCGAGAGGCCGGCAGATTTCGTGATGGAGAGAGTTTGTGAGAACACAGTGTCCAT
TGATTTCAAGCAAACTACAATGGTGACTGTGATTGGAGAGAGTTGGCACAATTTTGTCCC
AACTATCCGGTCAGGGGACTGGTCTGACATTGGTGGCCGTGACTACATGGAAGATGCGCA
TGTGTGCATCCCCAACCTAGCCAAGAATTTTGGTTTTAACATGGTGGATGATGAAGTTAT
TTCCTTTTATGGGGTCTTTGATGGCCATGGTGGAAAAGATGCTGCACAGTATGTTCGCGA
TAATTTGCCACGGGTCATCGTGGAAGATGCT

Homology of Contig U35_29100 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g55560.2	185	2e-52	protein\|protein phosphatase 2C, putative, expressed
Brachypodium v1_2	Bradi3g54290.1	361	5e-67
Arabidopsis v10	None