barSeed - Barley Seed Development Database

Probe CUST_36033_PI390587928

Source Contig U35_29101

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36033_PI390587928	Hv_44K_v2	GCTTGGACAGGGACTTGATGTCGAGTCATCTTGTAGAGTTCATGATTGGCCTTATTTCCT	574	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373522	4270	2e-24	2372 - 2431	100	60 / 60	plus	ABC13017
MLOC	MLOC_35819.1	915	2e-24	419 - 478	100	60 / 60	minus	None
JLOC1	JLOC1_23081.2	1024	8e-25	478 - 537	100	60 / 60	plus
JLOC1	JLOC1_23081.1	892	8e-25	350 - 409	100	60 / 60	plus
Harvest21	ABC28280	650	3e-25	575 - 634	100	60 / 60	plus
Harvest21	ABC18415	1230	3e-25	497 - 556	100	60 / 60	plus
Harvest35	U35_29101	650	3e-25	575 - 634	100	60 / 60	plus
Harvest35	U35_8464	1230	3e-25	497 - 556	100	60 / 60	plus

Contig Sequence (650 bp)

>U35_29101 650 Hv_44K_v2
GCGAGAAGGACGAGATCGTCAAGTCGGCCATCGAGCTGAGGAAATCGGAGATCGAAGATG
GGTACACGGAGGAGGTGTCCACCTGCAGACAGGCTCTGCTGCTGGACGTGAGAGACAAGC
TTCTCTTTGAACAGGAGTACGCAGGAAGCACCAGGGCCAAGGTTCCGCCCAGATCCTCTC
TTCATATACCCTGGAGCTGGTTGCCTGCTGCCTTGTGTGTCTTGCAGGAGGTTGGGGAAG
AGAAGCTGGTCTTGGACATTGGTCAGGCAGCTCTACGACGCCCTGATTCTAAGCCATATG
CTCACGATGTACTTCTTGCAATGGCACTAGCTGAATGCTCCATTGCAAAAGCTAGCTTTG
AAAAAAGTAAAGTATCTCTTGGCTTTGAGGCTCTAGCACGTGCTCAATATCTTTTGAGGA
AAAAACCATCTTTAGAGAAGATGCCTCTTCTTGAGCAGATCGAAGAATCACTTGAAGAGC
TTGCACCAGCTTGCACTCTAGAGGTTTTAAGCCTGCCCCGTACACCTGAAAATTCTGAAC
GCAGGCGTGGTGCTATTGCAGCTCTCTGTGAATTGCTTGGACAGGGACTTGATGTCGAGT
CATCTTGTAGAGTTCATGATTGGCCTTATTTCCTGGGCCAGGCAATGGAC

Homology of Contig U35_29101 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g57920.1	1228	8e-116	protein\|OsFBX154 - F-box domain containing protein, expressed
Brachypodium v1_2	Bradi5g26047.1	805	4e-125
Arabidopsis v10	AT3G19180.1	819	3e-88	\| Symbols: ARC6H, PARC6, ATCDP1, CDP1 \| paralog of ARC6 \| chr3:6632810-6636953 FORWARD LENGTH=819