- Probe CUST_36027_PI390587928
- Source Contig U35_29109
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_36027_PI390587928 | Hv_44K_v2 | GACATTGAAAGAGCAAATTATGGGCTTGTGAAATTACAAAAGGTTGCTTCTTTCTTTGAC | 598 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.889 | 1.400 | 1.439 | 1.222 | 0.901 | 0.799 |
| Raw | 6.178 | 16.830 | 15.086 | 20.202 | 3.831 | 3.567 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK376001 | 2173 | 2e-24 | 1417 - 1476 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_62384.8 | 1441 | 7e-23 | 414 - 473 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_62384.7 | 1552 | 7e-23 | 599 - 658 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_62384.1 | 2213 | 7e-23 | 1270 - 1329 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_62384.10 | 1250 | 7e-23 | 486 - 545 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_62384.3 | 1402 | 7e-23 | 630 - 689 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_62384.4 | 1393 | 7e-23 | 630 - 689 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_62384.5 | 1335 | 7e-23 | 540 - 599 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_62384.6 | 1327 | 7e-23 | 541 - 600 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_62384.9 | 1358 | 7e-23 | 414 - 473 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_62384.2 | 1577 | 7e-23 | 634 - 693 | 98 | 59 / 60 | plus | None |
| JLOC1 | JLOC1_40827.4 | 1894 | 4e-23 | 547 - 606 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_40827.3 | 1913 | 4e-23 | 557 - 616 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_40827.2 | 1831 | 4e-23 | 571 - 630 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_40827.1 | 1921 | 4e-23 | 574 - 633 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC28288 | 679 | 3e-25 | 599 - 658 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_29109 | 679 | 3e-25 | 599 - 658 | 100 | 60 / 60 | plus |
Contig Sequence (679 bp)
>U35_29109 679 Hv_44K_v2 GGGTCCAATTATCATGGTGCAGATTGAAAATGAATTTGGTTCATTTGGAGATGACAAGAA TTACCTTCATTACCTTGTTCAATTGGCCAGACAATATCTGGGGAATGACATTGTTCTGTA TACTACTGATGGGGGCACTACTAATACCTTAAAGAATGGAGCAATTCTTCAAGATGATGT CTTTGCAGCTGTTGATTTTTCTACTGGTGATGATCCATGGCCAATATTCAGATTACAGAA GAAATACAACTTACCGGGAAAATCAGCCCCTTTAAGTGCGGAATTTTATACCGGATGGCT AACACACTGGGGTGAGAGTATCGCAACCACAGCTGCCAGCAGCACAGCTAAAGCTCTTAA AAGTATTCTATGCCGCAATGGTTCTGCTGTACTCTATATGGCTCATGGAGGGACGAATTT TGGGTTTTACAATGGAGCAAATACTGGCCAAAATGAATTCGAGTACAAGGCAGACCTCAC ATCTTATGATTATGATGCGCCAATTAAGGAGCACGGAGACGTGCATAATCCCAAATACAA AGCACTGAGAAGAGTAATACATGAATGCACTGGCACTCCTCTGCAACCACTTCCTGCCGA CATTGAAAGAGCAAATTATGGGCTTGTGAAATTACAAAAGGTTGCTTCTTTCTTTGACAT ATTTGATAAGATCTGTGAT
Homology of Contig U35_29109 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g46200.3 | 559 | 2e-124 | protein|beta-galactosidase 8 precursor, putative, expressed |
| Brachypodium v1_2 | Bradi2g18440.3 | 671 | 1e-134 | |
| Arabidopsis v10 | AT1G72990.1 | 697 | 8e-92 | | Symbols: BGAL17 | beta-galactosidase 17 | chr1:27457480-27462168 REVERSE LENGTH=697 |