barSeed - Barley Seed Development Database

Probe CUST_36000_PI390587928

Source Contig U35_29113

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36000_PI390587928	Hv_44K_v2	GAACTCATGATGGCACAAATGGTTTTGATGTTGATCAACGTTTCAATCACAGTAGTCGAC	642	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_49625.1	2273	2e-24	1012 - 1071	100	60 / 60	plus	ABC08612
MLOC	MLOC_49625.3	2114	2e-24	1007 - 1066	100	60 / 60	plus	ABC08612
MLOC	MLOC_49625.2	2191	2e-24	1010 - 1069	100	60 / 60	plus	ABC08612
JLOC1	JLOC1_31750.2	2164	8e-25	982 - 1041	100	60 / 60	plus
JLOC1	JLOC1_31750.1	2196	8e-25	1014 - 1073	100	60 / 60	plus
Harvest21	ABC28297	702	3e-25	643 - 702	100	60 / 60	plus
Harvest35	U35_29113	702	3e-25	643 - 702	100	60 / 60	plus

Contig Sequence (702 bp)

>U35_29113 702 Hv_44K_v2
GGAAGTCATTTCTTTCTGTTGATCGGACTGTGACTCTTTTGGCTTTAACTGATTCTATGT
CAAGTTTATGTTCGGGAGCAGAACATCTGTATCAAGTTGTGCATGGAGCTGTGCCAGACA
GCTTTTGGGGTTCTGGAGCAAACATTGCATCTAGTGAAGTGGCAGTCCATGTTGTGAACC
ATATTTTTAAAAAGTTAAATGAAGTCTGTCTTGTGGAAGATGGCGAGGGTGAGCCATATC
ATATGCTGCTAGTGATATTTGCTGGAACCTTATTACCTTATCTTCAGTGCCTTGATTCCT
GGCTTTATGATGGTATTCTTGATGACCCTTATGAAGAGATGTTCTTTTATGCAAATAATG
CAGTTACGATAGATCAACCAGCCTTCTGGGAAATGAGCTATATGCTCAGAGTAAGAGGAC
CACGATCTGACAATTCATCAACCCTAACTGACAGTGAGTCTATCAGGACAAAGGAATCAA
GCAAACAGGAACCAAGTAATACAGGAGCTTGCTTGAAAACCAGTAATCAAGGTTACACGG
ATATACTATGCCCGGTGTTCTTGAAGGATATCGCAAGGCCCATTGTATCTGCTGGAAAAT
CATTTCAGCTTGTTCAGCATGTTCAGAGCACACACCATATTCGAACTCATGATGGCACAA
ATGGTTTTGATGTTGATCAACGTTTCAATCACAGTAGTCGAC

Homology of Contig U35_29113 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g41290.1	1056	3e-123	protein\|Spc97 / Spc98 family protein, putative, expressed
Brachypodium v1_2	Bradi4g02710.2	1012	8e-147
Arabidopsis v10	AT1G80260.1	995	1e-62	\| Symbols: emb1427 \| Spc97 / Spc98 family of spindle pole body (SBP) component \| chr1:30175924-30180511 FORWARD LENGTH=995