barSeed - Barley Seed Development Database

Probe CUST_3599_PI390587928

Source Contig U35_42409

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3599_PI390587928	Hv_44K_v2	GGCCGGGGAGGTGGTGCGCGACGTCATCATGGGCGTCTCCGACGGCCTCACCGTGCCCTT	61	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61500.3	1070	2e-24	645 - 704	100	60 / 60	minus	ABC14768
JLOC1	JLOC1_40191.1	1208	8e-25	221 - 280	100	60 / 60	plus
Harvest21	ABC38063	226	3e-25	62 - 121	100	60 / 60	plus
Harvest35	U35_42409	226	3e-25	62 - 121	100	60 / 60	plus

Contig Sequence (226 bp)

>U35_42409 226 Hv_44K_v2
CCTCGTGCCGGCAGCCCATGCTGGGGAAGGGCCCGCCGAGCCACCGGGAGCGGCACTTCA
CGGCCGGGGAGGTGGTGCGCGACGTCATCATGGGCGTCTCCGACGGCCTCACCGTGCCCT
TCGCCCTCGCCGCCGGCCTCTCCGGCGCCAGCGCGCCTTCGTCGCTCGTCCTCACCGCCG
GCCTCGCCGAGGTCGCCGCCGGGGCGATCTNCATGGGCCTCGGAGG

Homology of Contig U35_42409 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None