barSeed - Barley Seed Development Database

Probe CUST_35999_PI390587928

Source Contig U35_43407

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35999_PI390587928	Hv_44K_v2	GGTGCTTACTTGAGATGCAAGTCATGCAAGAAATGATGTACTTCCATTTTATGCCATTAG	47	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.309	1.615	1.036	0.901	0.437	0.468
Raw	65.723	134.831	70.246	97.719	17.132	19.234

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357447	1629	7e-23	1521 - 1580	98	59 / 60	plus	ABC40023
MLOC	MLOC_76955.8	2082	7e-23	953 - 1012	98	59 / 60	plus	ABC40023
MLOC	MLOC_76955.3	1206	7e-23	982 - 1041	98	59 / 60	plus	ABC40023
MLOC	MLOC_76955.2	2049	7e-23	920 - 979	98	59 / 60	plus	ABC40023
JLOC1	JLOC1_51321.5	3222	4e-23	907 - 966	98	59 / 60	plus
JLOC1	JLOC1_51321.2	3235	4e-23	920 - 979	98	59 / 60	plus
Harvest21	ABC40023	511	3e-25	48 - 107	100	60 / 60	minus	ABC40023
Harvest35	U35_43407	511	3e-25	48 - 107	100	60 / 60	minus

Contig Sequence (511 bp)

>U35_43407 511 Hv_44K_v2
TTTTTTTTTTTTTTTTTAATACTGAACTCAGGGACTTTTCTTTTTAACTAATGGCATAAA
ATGGAAGTACATCATTTCTTGCATGACTTGCATCTCAAGTAAGCACCTTTCATACCCTTT
ATTAAATAACTAGACAAAACATTTATGAAGACAGCGGCAGATGCTAAAACATCGGGGGGT
ACAATTATCTTTTCATATATACCATGGTACAAGTGAAAGCCCCTCGTAGCTGATTCACCT
TACCATCTGGGGAGAACATTAAGTCTTGAGCTCAACCAAGGGATGATGTCATTGGCTATA
TCATCCCTTTCAGGCTCGAAAAAAAGGGCATGTAAATATCCGTCATATAGCTTTATCGAC
TTATGAGTCGACATTGATGCTTGGTAAAGTCGTTGGGATGCTCTTGGGTCGGTTATCGTG
TCAACTGTTCCATGAAAAACTAAAAAAGGGACTGGAACTCTACTTAAGTTTCTCTGCAAG
TATGATGATATCCGGAGGATTTCGTTTCCTG

Homology of Contig U35_43407 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None