barSeed - Barley Seed Development Database

Probe CUST_3597_PI390587928

Source Contig U35_28117

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3597_PI390587928	Hv_44K_v2	CTTGCTAATGAGGGGATTGGTTCCTTTTACAAGGGATTATCTGCTGGTTTGCTATTTTTT	44	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11692.1	1912	3e-21	1271 - 1324	100	54 / 54	minus	ABC02784 ABC02785
JLOC1	JLOC1_7773.1	1816	2e-21	492 - 545	100	54 / 54	plus
Harvest21	ABC26772	179	3e-25	45 - 104	100	60 / 60	plus
Harvest21	ABC28019	600	6e-22	364 - 417	100	54 / 54	plus
Harvest21	ABC02784	1606	6e-22	369 - 422	100	54 / 54	plus	ABC02784
Harvest35	U35_28117	179	3e-25	45 - 104	100	60 / 60	plus
Harvest35	U35_50766	868	6e-22	744 - 797	100	54 / 54	minus
Harvest35	U35_15167	1602	6e-22	365 - 418	100	54 / 54	plus
Harvest35	U35_15166	624	6e-22	369 - 422	100	54 / 54	plus

Contig Sequence (179 bp)

>U35_28117 179 Hv_44K_v2
TCCAGTTGGGCGAGGGCTCTGCAACTTCTGTCACCAAGAAGATGCTTGCTAATGAGGGGA
TTGGTTCCTTTTACAAGGGATTATCTGCTGGTTTGCTATTTTTTTTTACATACACAACCG
CTCGACTTGGNTCCTTGGGGGGGGGGGGGAATAAACCCCCCCCCCCAAACGAATGAAAA

Homology of Contig U35_28117 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None