barSeed - Barley Seed Development Database

Probe CUST_35972_PI390587928

Source Contig U35_29121

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35972_PI390587928	Hv_44K_v2	TGTATGTGTTTTCTTTCCTTGCTTCGTGATTGATCGTGACATGGAGTGACGTTGGTGGGT	496	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71895.1	2465	2e-24	1345 - 1404	100	60 / 60	minus	ABC02783
Harvest21	ABC28306	634	3e-25	497 - 556	100	60 / 60	plus
Harvest35	U35_29121	634	3e-25	497 - 556	100	60 / 60	plus

Contig Sequence (634 bp)

>U35_29121 634 Hv_44K_v2
GCAACAANGTTCCCAACTAATACTCCTCCTTAACTAATTCCTTGTAATCGGTTAACTAAC
TGATTATACTCGTGGAGAATGTTCTGATCCTATTGCTTGCTTAAGTAATCAACAAATTCG
CGTACGTACAGGCGGACGTGTGCCACGCGTACCAGATCATGAAGAAGGGCGGGTTGAAGG
ATGAGAACATCATCGTCTTCATGTACGACGACATCGCTAACAACCGCGACAACCCCAGGC
CCGGGGTCATCATCAACCACCCCAAAGGCGGCGACGTCTACGCCGGAGTCCCCAAGGACT
ACACGGGGGCGGACGTGAACACCAACAACTTCCTCGCCGCCCTGCTCGGCGACAAGTCCA
AGCTCACCGGCAGCGGCAGCGGCAAGGTCGTCAGCAGCGGCCCGGACGACCACATCTTCG
TCTACTACGCCGATCACGGCGGCCCAGGGATCCTTGGTAAAATACCATTCCATCCCCATC
AATCTTTGCTTCAGTGTGTATGTGTTTTCTTTCCTTGCTTCGTGATTGATCGTGACATGG
AGTGACGTTGGTGGGTCGACCAGGGATGCCGGAGGACGAGGAGTACCTGTACGCGAACGA
CCTGGTGCGGACGCTGGAGAAGAAGCACGCCGGC

Homology of Contig U35_29121 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g30110.1	468	2e-51
Arabidopsis v10	None