barSeed - Barley Seed Development Database

Probe CUST_35970_PI390587928

Source Contig U35_29122

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35970_PI390587928	Hv_44K_v2	CATTTTTGGTTTATAAGGGGTTTGAACAACTGGAAGGGTGTTTGTCTTGACAGCACGACT	663	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.476	1.537	1.366	0.803	0.380	0.353
Raw	27.837	46.421	34.381	33.339	3.160	3.864

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_50159.1	730	8e-25	230 - 289	100	60 / 60	plus
Harvest21	ABC28307	772	3e-25	664 - 723	100	60 / 60	plus
Harvest35	U35_29122	772	3e-25	664 - 723	100	60 / 60	plus

Contig Sequence (772 bp)

>U35_29122 772 Hv_44K_v2
GGCCCGACGAGATCCACCCCAGCAAGGAGAGAAGGGAGGAGAGAGGCCGGCGGCGGCGGC
GGAGCAGGAGACGACCGGAGATGGTGCGGAAGGCGAAGGTCGAGTTCGACGAGAGGCCGC
CGGATGACTTCGACCCGAAGAACCCGTACGGGGACCCGGTGGCGATGCTGGAGTACAGGG
AGCACCTGGTGCGGGAGAAGTGGATCCAGATCGAGACCGCCAAGATCATCCGTGACCGCC
TCCGCTGGTGCTACCGGATCGAGGGCGTCAACCACCACCAGAAGTGCCGCCACCTCGTCG
ACCAGTACCTCGAGTCCACCCGCGGCGTCGGATGGGGCAAGGACCACCGCCCGGCGGACC
TCCACGAGCCCAAGAAGGTGGTCGAGGTCGAGGAGTAGCTCGGCTGCTTCTCCTGCTGTT
CCTGGAATGGACAGGTCAGGCTGCTTGCTTGTTATGCTAAGAAGAATCCTAGTTATTTTG
TATGTGCGATGCAGCTTTCGGTGCCGATTAATCTTAAATAAATGTGTACATCACCCTGTT
ACATGCACTAACTTCAGATTTTTGTCTGGAACTCTGGATTGGTCACATTACCATGCTTAG
ATGGTTGGGAACCTGGGAATGGTGTAGTAGTAGAACAACAAACATTAGCACATGCATAGG
AATCATTTTTGGTTTATAAGGGGTTTGAACAACTGGAAGGGTGTTTGTCTTGACAGCACG
ACTGGGCGTGCAAACTGTTCTTTCCACTAGGGCTTGGGAGTACTCTGCTACT

Homology of Contig U35_29122 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g42540.1	106	7e-53	protein\|expressed protein
Brachypodium v1_2	Bradi3g34360.1	106	6e-57
Arabidopsis v10	None