barSeed - Barley Seed Development Database

Probe CUST_35962_PI390587928

Source Contig U35_29128

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35962_PI390587928	Hv_44K_v2	ACTGACATACATTCTGCGTGAGAATGACAGGTTATTATCATCTACATGTATTGCATTTGG	583	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_79332.4	2411	2e-24	1844 - 1903	100	60 / 60	minus	ABC31742
MLOC	MLOC_79332.9	803	2e-24	263 - 322	100	60 / 60	minus	None
MLOC	MLOC_79332.7	1856	2e-24	1311 - 1370	100	60 / 60	minus	None
MLOC	MLOC_79332.1	2713	2e-24	1771 - 1830	100	60 / 60	minus	ABC31742
MLOC	MLOC_79332.5	2161	2e-24	1218 - 1277	100	60 / 60	minus	None
MLOC	MLOC_79332.10	965	2e-24	22 - 81	100	60 / 60	minus	None
MLOC	MLOC_79332.6	2258	2e-24	1319 - 1378	100	60 / 60	minus	None
JLOC1	JLOC1_52848.3	1685	8e-25	505 - 564	100	60 / 60	plus
JLOC1	JLOC1_52848.2	2221	8e-25	505 - 564	100	60 / 60	plus
JLOC1	JLOC1_52848.1	2324	8e-25	507 - 566	100	60 / 60	plus
Harvest21	ABC28317	646	3e-25	584 - 643	100	60 / 60	plus
Harvest35	U35_29128	646	3e-25	584 - 643	100	60 / 60	plus

Contig Sequence (646 bp)

>U35_29128 646 Hv_44K_v2
GGGAACTAGTACTCGGATATATGAAGTTATGCATGTATTTCTCAAAGAAGCCATACAAAG
TGTTTTTGGAATTTGGTGGGTTTGATCAGAGTGATGTTCTTATTAAGAAATCTAAGGCGA
GGGTGCGTAAGTACCAACCAACACTCCATTGTTCACATTATGTACTCTGATGCGATTTTA
TTACATACTTGTTGAAGCGATAATTGTTCTGTCCCATTTAGTACAGTTCATAAATCAGGA
CAACTTGGTTGAAATTATCTGCTATTGTGCAGTTTCTGAAGCCTGCTTTCACAGTTGTCC
GTGATAGAAGCTCCAAATGCTTTCTCCTTTTCATTCGGGGGGCTATTAGTATTAAGGAAC
GGTTAACAGCAGCAACTGGAGCAGACATTCCATTTCATCATGTTGTGGCTAAAGATGGCT
GTGTATCCAACCTAGTGCTGGGGTATGCGCATTGTGGAATGGCTACAGCGGCTCGCTGGA
TTGCAAATCAGGCCATTCCTTGCCTCAGTAAGGCAGTAGAGAAATTCCCGGACCACAGAA
TTACGATAATTGGGCATTCAATGGGTGCCAGTATCGCTGCATTACTGACATACATTCTGC
GTGAGAATGACAGGTTATTATCATCTACATGTATTGCATTTGGACC

Homology of Contig U35_29128 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g36770.2	418	3e-80	protein\|lipase class 3 family protein, putative, expressed
Brachypodium v1_2	Bradi4g05100.1	601	1e-85
Arabidopsis v10	None