barSeed - Barley Seed Development Database

Probe CUST_35953_PI390587928

Source Contig U35_17152

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35953_PI390587928	Hv_44K_v2	CATTCGAAGTTATGCGTCCGTTTTTGTGTGCTTATGTTCTCTGCTTTTGCAAGATTTTTT	1653	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.339	1.485	1.147	0.863	0.332	0.383
Raw	1734.513	2959.072	2041.533	2370.614	324.692	408.214

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38117.1	1941	2e-24	724 - 783	100	60 / 60	minus	ABC07040
JLOC1	JLOC1_24757.1	2112	8e-25	1305 - 1364	100	60 / 60	plus
Harvest21	ABC07040	1740	3e-25	1654 - 1713	100	60 / 60	plus	ABC07040
Harvest35	U35_17152	1740	3e-25	1654 - 1713	100	60 / 60	plus

Contig Sequence (1740 bp)

>U35_17152 1740 Hv_44K_v2
AAAAAATTACATTACTCGAATGTTGAACAGAATAATCTCAAGGAGAAGCTACATAAATTG
GCATCTGAGAAACGTAATATTGAGAAAGAAATTGATCATCTGGAGCCAGGAAAGGAGGAG
TTGGAAAGCCGTCTTGCTAAAAACGAACGGGAAGTAAGAAAGCGGGAGAAAAAAATAAAC
GAGATAGTAGACAGGATTTACAAGGATTTTAGCACGTCAGTTGGTGTGAAGAACATTCGT
GAATATGAAGAAAAGCAACTGAAAGATGCTCAAGCACTGCAGGAGAGGAAGCTAAGCCTG
AGCAATCAATTATCAAAACTGAAATACCAGCTGGAATATGAACAAAAGAGAGATATGCAT
GCTCCGATTGCGAAGTTAAACAATACGCCTGAGACCCTAGAGAAGGAGCTGAAGGGCTTG
CAGGAGAGAGAGACTCATGCTAAGGCTGACGCTGAACATATTTCAAATCAGATGGAAGAG
CTGAAAGCTGAGGCTGAAGACTGGAAGTTGAAGTCAGATGAATGTGAGACAGCAATTGAG
GAACTAAAGAAACAGAATGATAGTGTTGCTGCTGCATTGGCAAAGCTAGATCGTCAAGTG
AAGTTAAAGGAGGGACAAATAGTTCAACTTAGATCACGCCAACGGGAGATTCATGAGAAG
TGCGAACTGGAGCAGATAAAGCTTCCTACAGTTAATGATGCAATGGACACTAGATCATCC
TCACAAGAACTTGTCTTTGATTACAACCAGCTTAGTGCAATCTACCTGCAAGAGAAGTGT
CTGTCTGACCGTGACAAACTTGAGGCAGAGTTCAAACAAAAAATAGGTACACTAATGGCT
GAGATTGAACGCACCGCTCCAAACTTAAAAGCACTGGACCAATATGAAGCACTTCAGATG
AAGGAAAAAGAGGTGAGCGAGAAGTTTGAAGCAGCTAGGAAAGAAGAGCGAGATGTAGCT
GAAAAGTATAACTCTGTCAAGCAAAGAAGGTACGAGCTGTTCATGGAAGCCTTTGATCAT
ATATCTAAAGGCATAGACAAAATCTATAAGCAGTTAACAAAAAGTCACACACATCCACTT
GGAGGAACAGCATATTTAAATCTAGAAAATGAGGATGAGCCATTTCTTCATGGAATCAAG
TACACAGCTATGCCACCTACGAAGCGCTTTAGGGATATGGAACAGTTATCCGGTGGGGAG
AAGACAGTTGCTGCACTGGCATTGCTTTTTGCCATTCACAGTTTCAGGCCATCACCATTC
TTCATACTGGATGAAGTCGATGCAGCTCTAGATAATTTAAATGTTGCCAAGGTTGCTGGG
TTTATTCGATCAAAGTCATGTGAACGTGCTGGCGAAGAGCAAGATGACGACAGAGGTTGT
GGGTTTCAGAGTATTGTCATATCGCTGAAGGATAGCTTCTACGACAAAGCTGAAGCACTG
GTTGGTGTTTATCGGGATTCAGAAAGAAGCTGCTCCAGAACCCTCACCTTCGACCTTACC
AAGTATAAAGAAGCATGAAATCCACTCTGGTTGGAGTCTTCCTACGTGTTATAATCTATA
GTAACAACTGTCATCAACTGATCCTGTATTTCAACTTGTGTATATGATTAGTGGAATGTA
GTTAATGTAGAAACGGCACAAGACTACAGCATCCATTCGAAGTTATGCGTCCGTTTTTGT
GTGCTTATGTTCTCTGCTTTTGCAAGATTTTTTTTGAAGTGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17152 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi3g12830.2	1228	0.0
Arabidopsis v10	AT3G54670.3	1239	0.0	\| Symbols: TTN8 \| Structural maintenance of chromosomes (SMC) family protein \| chr3:20235818-20243701 FORWARD LENGTH=1239