barSeed - Barley Seed Development Database

Probe CUST_35952_PI390587928

Source Contig U35_17153

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35952_PI390587928	Hv_44K_v2	CGGGATTGGCCTTTTGTCACGTTATTTGTTCGGTTTGTTTCACTAAGAAAAGGGTTTATT	1436	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.803	2.748	1.161	0.668	0.227	0.287
Raw	1748.903	1535.183	583.757	520.517	65.994	87.316

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359119	1449	7e-23	1370 - 1430	98	60 / 61	plus	ABC13423 ABC14455
Harvest21	ABC13423	1439	3e-25	1380 - 1439	100	60 / 60	plus	ABC13423
Harvest35	U35_17153	1496	3e-25	1437 - 1496	100	60 / 60	plus

Contig Sequence (1496 bp)

>U35_17153 1496 Hv_44K_v2
CACGCCACACCCGTCCATCCCCCTCTCCTGCAAAACCGAAGGCCGGACCGGACCAGACCA
GACAGCACGCGCTGCAAACAAGCCCTTCTCCGACTCCGATCGTGCTCGCTCGCCGCCGGT
ACTAGTCTAGAGCAGCGGGGAGGAGGAGATGAGGGCGTCGCGGAAGCCGATGGCGGTGGT
GCTGAGCTGGGTGCGGAGGCAGCCGCCCAAGGTCAAGGCCTTCCTCGCCGTCGTCGCGGG
CATGACCGCGCTCGTCTTCATCCGCTTCATCGTCCACGACCACGACAACCTCTTCGTCGC
CGCCGAGGCAGCGCACGCGCTCGGCATCGCCGTGCTCATCTACAAGCTCACCAAGGAGAA
GACCTGCGCTGGACTTTCACTCAAGTCTCAGGATTTGACAGCATTGTTCCTGGCCGTTAG
GTTGTACTGCAGCTCTGTTATGGAGTATGACATCCATACAATACTGGATTCAGCTACACT
AGTAGCTACTCTTTTTGTCATTTACATGATTCGGTTCAGACTGAGGTCAACTTATATGCT
GGACAAGGACAATTTTTCATTGCTCTACGTGGTTATACCATGTTGTGTGCTGGCGTTTCT
TGCGCATCCTTCAACATCACATATCATGATCAATAGGATCTGCTGGGCTTTCTGTGTTTA
CTTGGAAGCTGTTTCAGTGCTGCCCCAGTTGCGCTTGATGCAAAACACAAAGATTGTTGA
ACCATTCACAGCTCATTATGTGTTTGCATTGGGTGTGGCAAGGTTCCTTAGCTGTGCACA
CTGGGTCCTTCAGGTCTTGGATACTCGTGGCAGATTATTGACTGCTCTGGGCTATGGTTT
TTGGCCATCGATGGTGCTCCTCTCTGAAATCGTCCAGACGTTCATCCTTGCAGATTTCTG
CTACTACTATGTGAAGAGTCTTGCTGGTGGACAACTAGTGCTGCGACTTCCTTCTGGGGT
GGTGTAAAATCTGGAACATGATGCACAACTCATTTGTTCGGTGCTGTGTCTTACTGTCGA
ACAGTGGCCCTGCTTCTGGAGCCCAACCTTCTCTCTTCCCATGTGGGATGGATTCAAGAG
TCCTGTTGCTTTTCTTTTTCCAGTTATAAACTGTTTGGTAAAAATTGTACCGGAGACTGT
TGGTCGTGAAGCGTAGGCTGTTGAGAACACAAAAAAAAAAAAAAAAAGCTGACTATTTAT
CCAGACTAGTTTTCAAGTACTTGCCTACTTACATGCTCAATCATCCCAATTCCGGATTGG
GGAGGCCATGAGATCCTCCATTTTCGATGGTCATGGTCTCTTTGATTTGTGTTGATCTGG
TGTTGTAGCTCTAAGCATTGGACTGGCCAGGGTTCCAGCTGAGCCAACATCTCCAGTTTT
TGTATGGGCCTTGGATTCAGAGAGTTTGCTCAGGCTAGATATAGGATGGTCGTTGGCGGG
ATTGGCCTTTTGTCACGTTATTTGTTCGGTTTGTTTCACTAAGAAAAGGGTTTATT

Homology of Contig U35_17153 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g43470.1	273	8e-175	protein\|ER lumen protein retaining receptor, putative, expressed
Brachypodium v1_2	Bradi3g42420.1	273	0.0
Arabidopsis v10	AT1G75760.1	272	3e-161	ER lumen protein retaining receptor family protein \| chr1:28446940-28448421 REVERSE LENGTH=272