barSeed - Barley Seed Development Database

Probe CUST_35946_PI390587928

Source Contig U35_17157

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35946_PI390587928	Hv_44K_v2	ATAAAGAAGATCCTGATCTTTTTTGGCAAAGTGTAGTTCTCGGACCAGGTTGGATTATTT	2479	GeneList: turquoise MasterList: Transferase_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.166	1.480	1.371	0.930	0.547	0.319
Raw	22.499	46.770	37.109	40.012	8.063	3.693

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57480.1	502	3e-21	284 - 343	97	58 / 60	plus	ABC50821
JLOC1	JLOC1_37259.1	3997	2e-21	3516 - 3575	97	58 / 60	plus
Harvest35	U35_17157	2641	3e-25	2480 - 2539	100	60 / 60	plus

Contig Sequence (2641 bp)

>U35_17157 2641 Hv_44K_v2
GGTCGCAAGCACGGCATCGAGCCTCGCAATCCTGAGAGTTACTTCAGTCTGAAGAGGGAC
CCCTACAAGAACAAGGTACGCTCAGACTTTGTCAAGGACAGGAGGAGGATCAAGAGGGAG
TATGACGAGTTCAAGGTCAGAATTAATGGTTTGCCTGACTCGATCCGTCGCCGCTCTGAT
GCTTACCATGCCAGAGAAGAAATCAAGGCCATGAAGAGGCAGCGTGAAGCTGCTCTTGAT
GATGTTGTGGAGACTGTTAAAGTTGCTAAAGCTACCTGGATGGCTGATGGCACACATTGG
CCCGCTACCTGGATTCAACCCTCTGCAGAGCATACTCGGGGAGACCATGCTGGAATAATT
CAGGTGATGCTCAAACCTCCAAGTGATGATCCTCTGTATGGTGGTGACGGTGAAGAAGGC
AGACCCCTTGACTTCACTGACATAGATATCCGACTGCCAATGTTGGTCTATGTGTCCCGA
GAAAAGCGCCCAGGCTATGACCACAACAAGAAGGCAGGTGCAATGAATGCTCTAGTCCGC
TCATCTGCTGTCATGTCAAATGGACCCTTCATACTCAACCTGGACTGTGATCATTATGTT
TACAACTCTCAAGCTTTCCGTGAAGGCATGTGCTTCATGATGGACCGTGGTGGTGACCGT
ATTGCCTATGTCCAGTTCCCCCAACGGTTCGAGGGCATTGATCCATCAGATCGCTACGCC
AACCACAACACTGTCTTCTTTGATGTCAACATGCGTGCATTGGATGGTCTCATGGGACCA
GTCTATGTCGGCACTGGCTGTCTGTTCCGCCGTGTTGCACTCTATGGATTTGACCCTCCA
CGCTCCACAGAGCACGGTGGCTGCTGTAGCTGTTGCTTCCCGAAGAAGCGCAAGATCAAG
AGCACTGTTTCCTCAGCTACATCTGAAGAGACACGGGCTCTGCGGATGGCAGATTTTGAT
GATGAGGAGATGAACATGTCAACATTTCCCAAGAGGTTCGGTAACTCGAACTTCCTCATC
AACTCTATACCGATTGCCGAGTTCCAAGGGCGCCCGCTTGCTGATCACCCTGGTGTGAAG
AATGGCCGTCCTCCTGGTGCCCTCACTGTCCCTCGTGACCTTCTCGACGCCTCCACGGTC
GCTGAGGCTATTAGTGTCATCTCATGCTGGTATGAGGACAAGACAGAGTGGGGTCAGCGT
GTCGGATGGATTTATGGTTCAGTCACAGAGGATGTCGTCACAGGGTACCGGATGCACAAC
CGTGGGTGGAAGTCTGTCTACTGTGTCACCAAGCGTGATGCCTTCCGCGGCACTGCACCT
ATCAACCTGACTGACCGTCTCCACCAGGTGCTCCGGTGGGCTACTGGCTCAGTGGAGATC
TTCTTCTCCCGCAACAATGCGCTGCTCGCGAGCCGAAGGATGAAGTGTCTTCAGAGGATT
GCGTACCTGAACGTGGGCATCTACCCGTTCACGTCCATCTTCCTCATCGTCTACTGCTTC
CTGCCGGCGCTGTCGCTCTTCTCCGGACAGTTCATCGTCAAGGAGCTGGACGTGACCTTC
CTCACCTACCTGCTGGTCATCACCCTGACGCTGTGCATGCTGGCGGTGCTGGAGATCAAG
TGGTCTGGCATCAACCTGGAGGAGTGGTGGAGGAATGAGCAGTTCTGGCTCATCGGCGGG
ACGAGCGCTCACCTCGCCGCTGTGCTGCAGGGCCTCCTCAAGGTCATTGCTGGCATTGAG
ATCTCCTTCACGCTCACATCCAAGTCCGGCGCAGACGACGAAAACGACGAGTTCGCCGAC
CTCTACATTGTCAAGTGGACGTCCCTCATGATCCCACCCATTGTCATCATGATGGTCAAC
CTCATCGCCATAGCTGTCGGCTTCAGCCGCACCATCTACAGCGAGATCCCGCAGTGGAGC
AAGCTCCTGGGCGGTGTCTTCTTCAGCTTCTGGGTACTGGCTCACCTGTACCCGTTCGCC
AAGGGCCTCATGGGGCGCCGCGGGCGCACGCCGACCATCGTCTTCGTCTGGTCCGGCCTC
CTTGCCATCACCATCTCCCTGCTGTGGGTCGCCATCAACCCGCCGTCCCAGAACTCGCAG
ATCGGAGGCTCCTTCCAGTTCCCCTGATCGTTGAAGCTAGCTTCATCTTATATGAGTTAC
ATACCATTTGTTCCAGCAGCAGCAGGTAGCTGGTGGGGAGTAAAAGTAAATTCTGACCGT
TCCCTGTGGTTAAATTAGGTGTTTTTTCGTGTTGTCGGAAAACGGTGGTGGGTCATGGAT
CATACTAGTTCATTTGTTCTCTTGATGATTCTGTTCATTAGATGTTTGGACCTGGACAAC
ATCTAGTACAAAAATTCAGAAGTCTTATTAGCAACTCTTTTCAAAGTCCCCACATCCGTC
TTGCATTGCAGCTGGTTGAGTGGCATGTGTTGAATATTCTCAAAGCTTGTGTTACCTGCA
GCCATCGTGCTCGGTCCTGATAAAGAAGATCCTGATCTTTTTTGGCAAAGTGTAGTTCTC
GGACCAGGTTGGATTATTTTTTTTATAATCTCAAATTGGTCGGACCCTTCCCTGGACGCT
GTACAAATGGGAGCTACATGTACCGGGCTGCCCAACAGAATGTACAGAAATTCATGTCTT
A

Homology of Contig U35_17157 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g02180.1	1171	protein\|CSLD2 - cellulose synthase-like family D, expressed
Brachypodium v1_2	Bradi1g50170.1	1183
Arabidopsis v10	AT5G16910.1	1145	\| Symbols: ATCSLD2, CSLD2 \| cellulose-synthase like D2 \| chr5:5561679-5565290 FORWARD LENGTH=1145