barSeed - Barley Seed Development Database

Probe CUST_35940_PI390587928

Source Contig U35_43424

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35940_PI390587928	Hv_44K_v2	CGTAGGGGTTTGTGTGAATGTCACTCGATGATTTTTGTCCTCTGACCTCTGAGAAAAATG	3	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.259	2.875	1.309	0.762	0.371	0.363
Raw	145.352	215.296	79.567	73.877	11.511	13.233

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360716	2771	7e-23	2684 - 2743	98	59 / 60	plus	ABC40046
MLOC	MLOC_54559.1	1269	7e-23	1204 - 1263	98	59 / 60	plus	ABC40046
MLOC	MLOC_54559.2	1026	7e-23	962 - 1021	98	59 / 60	plus	ABC40046
JLOC1	JLOC1_35119.2	739	4e-23	587 - 646	98	59 / 60	plus
JLOC1	JLOC1_35119.1	1111	4e-23	959 - 1018	98	59 / 60	plus
Harvest21	ABC40046	529	3e-25	4 - 63	100	60 / 60	minus	ABC40046
Harvest35	U35_43424	529	3e-25	4 - 63	100	60 / 60	minus
Harvest35	U35_35206	858	1e-23	358 - 417	98	59 / 60	plus

Contig Sequence (529 bp)

>U35_43424 529 Hv_44K_v2
TGACATTTTTCTCAGAGGTCAGAGGACAAAAATCATCGAGTGACATTCACACAAACCCCT
ACGAGAGAATGTACGCCGACTATTCTATTAATGCAGGGGTATAACTTATATCCACAAATG
AGTAACCCAAATCAACACTCAAAACCTGCAGGGACTCCACCACGTGTAGTACATCGTCGA
GTGAAGCAATCTCATCCTACTCAACATGATTTGATTTCCGATCCTGTAACCGTCAATCTT
GCTTGTCGCTGGTGTTGGTGTCATCGGTTGGCCACACCACAGTTTCCATTAGCCTTTCGC
GCATGAGCTCCAGGTTCTCGTTGGAAATCCTCTCGTACATTTTCGTATGGTCGCATTTCT
TGATCCATCTGCCGTATAAGTGAAGGCGTGTGACCATGACCCTCTCTGCCAGGTCTTGCC
TTTCCTTCGAGAGTGTCCTCAGGAAATGTACGCCCTCTTTTGCGTCGTTGACGACAAGGT
AATTATAAAGCCAAGTGTATGCTGGCGGATTCATTTCATACAACTGATA

Homology of Contig U35_43424 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g24147.1	151	8e-54
Arabidopsis v10	None