- Probe CUST_35937_PI390587928
- Source Contig U35_43426
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35937_PI390587928 | Hv_44K_v2 | ATGGGTGTGGTTTTCGAGGAGGGCATCGAGAGGGTTGGCAAGTTACCGCCATCCATCATG | 102 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.254 | 12.703 | 3.141 | 0.741 | 0.601 | 0.796 |
| Raw | 40.568 | 245.536 | 49.717 | 18.917 | 3.141 | 7.052 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_75172.2 | 1931 | 7e-23 | 1790 - 1849 | 98 | 59 / 60 | plus | ABC30512 ABC40048 |
| MLOC | MLOC_75172.1 | 587 | 7e-23 | 258 - 317 | 98 | 59 / 60 | minus | ABC30512 ABC40048 |
| JLOC1 | JLOC1_50135.1 | 1503 | 4e-23 | 274 - 333 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC40048 | 420 | 3e-25 | 103 - 162 | 100 | 60 / 60 | minus | ABC40048 |
| Harvest35 | U35_43426 | 420 | 3e-25 | 103 - 162 | 100 | 60 / 60 | minus |
Contig Sequence (420 bp)
>U35_43426 420 Hv_44K_v2 TTTAAAAACTTTTTTTTTTTTTACAAGTAAAAAGTACTTTTTTTGTATAAAAAAATCATC AGTTGCACCCAATCAATGAAGTCCCTTAAATTGTCCACACCCCATGATGGATGGCGGTAA CTTGCCAACCCTCTCGATGCCCTCCTCGAAAACCACACCCATGCCCATGAACACATGCGC TTCTATTTGGCAGTGGAATAACCACACCCCCGGGTTGTCTGCCCTTATTTTTTCCGCTGT CCACCCATCATTGTGCAGTGGCACCGTGTTCTTCATGATTGGGCCTCCCCCGTTGAGCAG TCTCCAGGCGTCCGCGGCAGGGTTGAACTTGCCTTCTCCATAGCCGAGCACCCAAAAGTC ATGGCCATGGAGGTGCCATGGGTGCGTCTCGCTCTTGTTGTTAAACATGTTGGAGTTCTG
Homology of Contig U35_43426 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi4g34690.1 | 581 | 1e-54 | |
| Arabidopsis v10 | None |