barSeed - Barley Seed Development Database

Probe CUST_35930_PI390587928

Source Contig U35_49503

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35930_PI390587928	Hv_44K_v2	ATGAGTAAAGTTTTAAGGCCTGGTGGTGGTAAAAATAGGTTGAAAAGCATGAGTGCAATT	449	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.693	0.768	0.702	1.634	1.995	2.466
Raw	3.908	6.804	7.111	24.856	10.972	14.702

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68842.5	4749	2e-24	3533 - 3592	100	60 / 60	minus	ABC07644
MLOC	MLOC_68843.2	1536	2e-24	359 - 418	100	60 / 60	minus	None
MLOC	MLOC_68843.4	2127	2e-24	99 - 158	100	60 / 60	minus	None
MLOC	MLOC_68843.1	1533	2e-24	366 - 425	100	60 / 60	minus	None
MLOC	MLOC_68843.3	1851	7e-23	1652 - 1711	98	59 / 60	plus	None
JLOC1	JLOC1_45588.1	1333	8e-25	1199 - 1258	100	60 / 60	plus
Harvest21	ABC51253	509	3e-25	450 - 509	100	60 / 60	plus
Harvest35	U35_49503	509	3e-25	450 - 509	100	60 / 60	plus

Contig Sequence (509 bp)

>U35_49503 509 Hv_44K_v2
GTACTCCATGAGAGGAGCAAGAGAGATTGCCAAACTGGCCAACAGCTGCCTTGCAAAGTA
TGCAAAGGACCGCCCCACCATGGTGGAGGTGGTTGAGAGGCTGAAGCTGGCAATGCAGCA
CAAGGAACTGGATGGTCATCATGCCTGCTCCGTGGAGGAAAGTTCGTTTCTTCATCAGGC
ACCAACGACACCACCCATGGAGGATGAGGCTGCGGTGTCGGCAAGACGGCGGATGCTTCA
TTTGGCTGCTCTAGGTGAGAATGCAAATGCTCATGCAAGGAGAAGATTGATGCTCATGAG
GGCAGCTGCTCCTCGGACGTGATACCCTGCCATCGTTGAGGCTCTTGATTTTGACGGATT
TTTTCTTCTTGTTGTTCTGCTTTTTATGTATAATAACTGTATATATGGTTTAGAAATTTA
GTTTTCTCCAGTGCCATATCTAGTGATTGATGAGTAAAGTTTTAAGGCCTGGTGGTGGTA
AAAATAGGTTGAAAAGCATGAGTGCAATT

Homology of Contig U35_49503 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None