barSeed - Barley Seed Development Database

Probe CUST_35911_PI390587928

Source Contig U35_37530

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35911_PI390587928	Hv_44K_v2	AAATCGGAGTTACATTTGAGGACATCGGAGCATTGGAAAGTGTCAAGGAAACTCTGAAGG	560	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362285	3902	2e-24	2474 - 2533	100	60 / 60	plus	ABC07960 ABC24913
MLOC	MLOC_4921.1	3584	2e-24	1903 - 1962	100	60 / 60	plus	ABC07960 ABC24913
MLOC	MLOC_4921.2	3362	2e-24	1901 - 1960	100	60 / 60	plus	ABC07960 ABC24913
JLOC1	JLOC1_3127.1	3404	8e-25	1901 - 1960	100	60 / 60	plus
Harvest21	ABC33241	680	3e-25	561 - 620	100	60 / 60	plus
Harvest35	U35_37530	680	3e-25	561 - 620	100	60 / 60	plus

Contig Sequence (680 bp)

>U35_37530 680 Hv_44K_v2
GCTTCCTTTCAAGTTTCCTTTATAGCCAGCAATTCTTGACCTTGCATTGCAGGACTTGGA
TCAGGTACATGATAAAAGTAAGGAAATGCCAAAGGCGATGAGACATCTAACAAAGATTTT
CCCAAATAAAGTGACGATCCAACCACCACAAGATGAAGTTGAGCTTTCACGTTGGAACCA
GATGTTAGATAAAGATATTGAAATTCTTAAAGCAAATGATAACACTTCAAAAATACGCTC
TTTTCTAACGCGGATTGGCTTGGAATGCTCTGATCTTGAGACAATATGTGTCAAGGATCG
CGTCCTTACAAATGAGTGTATTGATACAATAGTTGGTTTTGCTTTGAGTCATCAACTAAA
GCACTCAACAGCTACAAACCCTGACCCTTCAGTTGATTTGCAGTTTTCCCTATCTAGTGA
AAGTCTTAAGCATGGAGTTGATATGTTGGAAAGCACCCGTTCTGGCCCTAAGAGCAGCAA
CAAAAGGAAGCCGCTTAAAGATATTGCTACGGAAAACGAATTTGAAAAGAGGCTTCTTGC
CGATGTTATCCCTCCTAATGAAATCGGAGTTACATTTGAGGACATCGGAGCATTGGAAAG
TGTCAAGGAAACTCTGAAGGAGTTAGTGATGCTGCCCTTGCAAAGGCCTGAATTGTTTTC
TAAAGGACAACTTATGAAGC

Homology of Contig U35_37530 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g22420.2	915	7e-107	protein\|AAA-type ATPase family protein, putative, expressed
Brachypodium v1_2	Bradi1g62730.1	664	1e-108
Arabidopsis v10	AT4G02480.1	1265	4e-63	AAA-type ATPase family protein \| chr4:1082082-1088680 REVERSE LENGTH=1265