barSeed - Barley Seed Development Database

Probe CUST_358_PI415269222

Source Contig TA40965_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_358_PI415269222	Hv_44K_v2	GGAGGACCACTCTGCGTAGGTGATACACACATTCTGTGAAGATGTACTTCATTGAAAAAA	1388	GeneList: bisque4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.051	3.846	3.242	0.713	0.901	0.811
Raw	16.108	50.652	34.435	10.881	3.632	3.973

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73815.2	2293	2e-24	2205 - 2264	100	60 / 60	plus	ABC15337 ABC15476
MLOC	MLOC_73815.3	2232	2e-24	2108 - 2167	100	60 / 60	plus	ABC15337 ABC15476 ABC16360 ABC25448
JLOC1	JLOC1_49155.2	2257	8e-25	2132 - 2191	100	60 / 60	plus
JLOC1	JLOC1_49155.1	2251	8e-25	2126 - 2185	100	60 / 60	plus
Harvest21	ABC15476	750	3e-25	651 - 710	100	60 / 60	plus	ABC15476
Harvest35	U35_4393	1482	3e-25	1380 - 1439	100	60 / 60	plus

Contig Sequence (1482 bp)

>TA40965_4513 1482 Hv_44K_v2
CGGCACGAGGCGCTACGAAACGACGCCCTTCTTCAATGGCCCGGTGATGGTGCGGCTGGC
AGGAACGTCGCCCAGCTCTGGCGCACCGGCGTCGGCGCCGGCCATGGTTCCCAACGTTTT
GACACCACCGGCGGCGGCAGGAGAAGGGAGAAAGTACAGTGTTCCTGGCATGGTTCTTAT
AGTTCTTCTACCTACCGCAGCAGCCATAAACATTGTGGTTTGCTTCCTTCTCTGGAGGAG
GCGGCGGCCACTGGCAGAAGCAAAGCAGCCATATACAGGTTATTCTGGCGAGGCCGAGGA
CATTGAAAGTGTGGACTCGATGCTGATCGACATTTCAACTTTACGAGCTGCAACCGGGGA
TTTTGCGGAAGCCAACAAGCTTGGCGAAGGTGGATTCGGTGCGGTGTACAAGGGTACTCT
CCCAGACGGCGAAGAAATAGCAGTGAAGAGACTGTCGAAGAGCTCAACACAAGGAGTGAA
GGAGCTGAAGAATGAACTCGCCTTGGTTGCCAAGCTTAAGCACAAGAACCTCGTCAGGCT
TGTCGGCGTCTGCCTGGAGCACGAGGAGAGGCTGCTCGTCTACGAGTTCGTCCCAAACCG
GAGCCTCGATAAGATCCTATTCGACACAGAGAAACGCGAGCAACTTGATTGGGGAAAGAG
GTACAAGATCATAAACGGGATCGCTCGAGGCCTGCAGTACCTCCACGAAGATTCCCAGCT
CAAAGTCGTCCACCGTGACCTCAAAGCCAGCAATATCTTGCTAGACACCAACATGAACCC
CAAGATCTCGGACTTCGGCCTCGCCAGGCTCTTCGGGCGAGACCAGACGCAGGCCGTCAC
CAGCCGAGTCGTTGGAACATATGGGTACATGGCGCCGGAGTACGTGATGCGCGGGAACTA
CTCTGTGAAGTCGGACGCGTTCAGCTTCGGGGTCATGGTGCTGGAGATCGTGACGGGGAG
GAAGAACAACGACTGCTACAACTCCCAGCAGTCTGAAGATCTATTAACCACGATATGGGA
GCACTGGACGGCCGGAACAGTGCTGGCTACGATGGACCCGAGCATCGGCAGCAGCTTCTC
GGAGAGCGACGTCCGAAGGTGCGTCCACGTAGGGCTTCTGTGCGTTCAGGGGAACCCGGC
GGAAAGGCCGGTGATGTCGTCGGTGGTCATGATGCTCGGAGGCGAAACAGTCTCTCTCAG
CGCCCCGTCCAAGCCGGCGTTCTATGCAAGGAACGCCGGTGCCGATCACTCGGTCGTCAT
CGCGTCCACCGTGTCCACCGTGTCCTTGCAGGATGGTCCTGCTTAGCAAGTTCAGTTTGC
AGATTAATGGATGCCTCGCGCTTAAGGGCATGTAAAGAAACCTTATTTTCTTTAAAAAAA
GAAGAAAAGGAGGACCACTCTGCGTAGGTGATACACACATTCTGTGAAGATGTACTTCAT
TGAAAAAAAAAGATTGAGAGATTCTTTCAAAAAAAAATAAAG

Homology of Contig TA40965_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g35370.1	700	0.0	protein\|TKL_IRAK_DUF26-lc.15 - DUF26 kinases have homology to DUF26 containing loci, expressed
Brachypodium v1_2	Bradi1g25552.1	671	0.0
Arabidopsis v10	AT4G23180.1	669	5e-137	\| Symbols: CRK10, RLK4 \| cysteine-rich RLK (RECEPTOR-like protein kinase) 10 \| chr4:12138171-12140780 FORWARD LENGTH=669