barSeed - Barley Seed Development Database

Probe CUST_35897_PI390587928

Source Contig U35_13584

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35897_PI390587928	Hv_44K_v2	CCCAAGTCTTGTTAAACTCCTTATAAATTTGGTTGAAATATTCGGGCCTGCCCACCTGTT	597	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.597	1.285	1.138	0.748	0.742	0.692
Raw	142.636	147.858	136.931	133.200	47.038	50.619

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55536.1	6001	7e-23	4265 - 4324	98	59 / 60	minus	ABC14211 ABC38295
JLOC1	JLOC1_35838.2	6000	4e-23	1678 - 1737	98	59 / 60	plus
JLOC1	JLOC1_35838.1	5993	4e-23	1671 - 1730	98	59 / 60	plus
Harvest21	ABC25672	660	3e-25	598 - 657	100	60 / 60	plus
Harvest35	U35_13584	660	3e-25	598 - 657	100	60 / 60	plus

Contig Sequence (660 bp)

>U35_13584 660 Hv_44K_v2
GCTTTGGGCTGGTAGACACCAGAGGCAGTTATCAGCTGCTGACACTTTGGCTTTCTTCAA
TGCCTTCAAACAGAGTTTTCTTTGGCTTCTTAAGAAAGTACCAAGAAATTTTGTAGGAGA
TTCTTCAGATAATATTCACAACATGCTTATAGCGAATGTTCTAGTCAAAATTGTTTGGCA
TGATTACCTTCAATTATCGTTGTCCAAAAACCTGGACGCAATTCCAGGTTTATTGTCTGA
AGAAGCAACTACTGATGATCACCAGCTATCTCATAAGTCATTGTTGGTGCCGAACGTGCG
CCTTCCGATTTACTATTATCAGGACTTGGGGAAATGTATTGTTGAAATACTGGATGAGAT
TTCAGTTGCAGAAAGCCATTTGTTGGAAGTTGCTTGTGAGTCTCTGTTGAGGGACTATTT
GGACATAGTTCACCAAGGGGAGAAGCTATCAAAATTTCAGGATCATGTAGACCAACTTGC
TTCTTTCTTTTGTTCTTTGGATCTACTCGTGGTACAGAACGGTAGGACATGGCCGCTGGA
AAACTTAGCAAGACCACTGGTTGTACATTCTCTGCCAGCTATCAAGTCCATGGACTCCCC
AAGTCTTGTTAAACTCCTTATAAATTTGGTTGAAATATTCGGGCCTGCCCACCTGTTCTT

Homology of Contig U35_13584 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g74610.1	1922	1e-83	protein\|zinc finger, C3HC4 type domain containing protein, expressed
Brachypodium v1_2	Bradi2g62760.1	1923	4e-105
Arabidopsis v10	None