barSeed - Barley Seed Development Database

Probe CUST_35895_PI390587928

Source Contig U35_49514

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35895_PI390587928	Hv_44K_v2	AGTGTGGCTAACTCGAGTCATGGTAATGATAATTAGGTGAATGGTTAATCAAGGAAGAGA	167	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.795	2.314	1.280	0.853	0.810	0.751
Raw	29.563	35.754	18.084	17.407	5.201	5.918

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC51269	565	3e-25	168 - 227	100	60 / 60	plus
Harvest35	U35_49514	565	3e-25	168 - 227	100	60 / 60	plus

Contig Sequence (565 bp)

>U35_49514 565 Hv_44K_v2
GCATCCATTGATGAAGTCACCAAATGCTCCGGCGATGCATTTCTAGTAACGGTCCGTAAT
AAGAAGAGAGTAGGTTATAATTATGAACTGAGCTTGAGATTTAAAGGTAAAACATATATC
ATGCCAAACACTGCATCATTTCATTTAGTTAAAATATGTATTACTCCAGTGTGGCTAACT
CGAGTCATGGTAATGATAATTAGGTGAATGGTTAATCAAGGAAGAGAAAAAGAAAGTCAC
TGGCCATATAGACATCCCTGAGTTTTCCTTGGGTGAGCTTGATGACCTAGAGGCAGAAGT
GAGGTTCACCGATACCCTTGAATGGGACGACAAGTCGCGGATCAGCAAGGATGTGAAATC
ATTCCTTTCTCCCATCAGGGAGAAGCTGGGTACCTTCGAGCAAGAGCTGAAAGATAGGTA
GGGAAATGCCGGCAGGCGCCACGCGCTGTTTTCAGTATTTGTTACCCATTCTTGTAGCTC
GGACTATCTTTGTTGTGTTGGATTAAGCGTTGCTGTCTAGACTCGAGGTCATGTTATTCT
TGTTTCTCCAGTCAGTGTAAGGTTA

Homology of Contig U35_49514 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None