barSeed - Barley Seed Development Database

Probe CUST_35892_PI390587928

Source Contig U35_13587

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35892_PI390587928	Hv_44K_v2	ATTAGCAAAGGCAATGCAACGCCTGTATTTCGAAAAAACAGGCAGCCAATGGAAGAGGTT	467	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65527.2	5575	2e-24	1319 - 1378	100	60 / 60	plus	ABC14915
MLOC	MLOC_65527.1	5990	2e-24	1727 - 1786	100	60 / 60	plus	ABC14915
MLOC	MLOC_65526.3	7221	2e-24	2707 - 2766	100	60 / 60	plus	ABC14915
MLOC	MLOC_65526.4	7224	2e-24	2707 - 2766	100	60 / 60	plus	ABC14915
MLOC	MLOC_65526.8	3775	2e-24	2588 - 2647	100	60 / 60	plus	ABC14915
MLOC	MLOC_65526.1	4515	2e-24	2708 - 2767	100	60 / 60	plus	ABC14915
MLOC	MLOC_65526.9	2739	2e-24	1658 - 1717	100	60 / 60	plus	None
MLOC	MLOC_65526.5	5659	2e-24	2618 - 2677	100	60 / 60	plus	ABC14915
MLOC	MLOC_65526.2	3955	2e-24	2622 - 2681	100	60 / 60	plus	ABC14915
JLOC1	JLOC1_43121.2	5642	8e-25	2605 - 2664	100	60 / 60	plus
JLOC1	JLOC1_43121.1	5201	8e-25	2703 - 2762	100	60 / 60	plus
Harvest21	ABC21695	568	3e-25	468 - 527	100	60 / 60	plus
Harvest35	U35_13587	569	3e-25	468 - 527	100	60 / 60	plus

Contig Sequence (569 bp)

>U35_13587 569 Hv_44K_v2
CCGGGACAATCTTGAGAGGTTGCATGCATCTTGTTGATCTAGCCGGTAGTGAAAGAGTTG
ATAAATCTGAGGTTGTTGGAGATAGACTGAAGGAAGCACTGTACATAAACAAGTCACTTT
CAGCACTCGGAGATGTGATCGCATCCCTTGCCCAGAAAAACTCGCATGTCCCTTACCGCA
ACAGCAAGCTTACCCAGCTTTTGCAAGATTCTCTAGGAGGACAAGCAAAAACACTGATGT
TTGTGCACATAAGCCCTGAACCAGATGCTGTTAATGAGACAATAAGCACCTTGAAGTTTG
CTGAACGAGTTGCCTCTGTTGAGCTGGGCGCAGCAAAAGCGAATAAAGAAGGTGGTGAGG
TTAGGGAGCTCAAAGAACAGATTGCTTGCCTTAAGGCAGCACTGGCTAAGAAGGAAGGAG
AACCAGAGAACATTCAGAGCACACAGTCAAGCCCAAACATATATGGAATTAGCAAAGGCA
ATGCAACGCCTGTATTTCGAAAAAACAGGCAGCCAATGGAAGAGGTTGGAAACCTANAGG
TCCGGAACAATGTCACTCCCATGCAAAAA

Homology of Contig U35_13587 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g36100.1	955	2e-106	protein\|kinesin-4, putative, expressed
Brachypodium v1_2	Bradi4g05370.1	905	7e-106
Arabidopsis v10	AT2G47500.1	983	8e-70	P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain \| chr2:19493247-19497882 FORWARD LENGTH=983