- Probe CUST_35879_PI390587928
- Source Contig U35_25567
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35879_PI390587928 | Hv_44K_v2 | GTGTATCTTCATTTAGTTAGCTCTGTCTTCAAAGTTGATGTGATTCGTTACATTGTTGGT | 224 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.692 | 1.683 | 1.163 | 0.796 | 0.365 | 0.476 |
| Raw | 982.803 | 1482.891 | 912.360 | 958.693 | 158.161 | 228.341 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_6533.2 | 681 | 2e-24 | 535 - 594 | 100 | 60 / 60 | plus | ABC25358 |
| MLOC | MLOC_6533.1 | 910 | 2e-24 | 723 - 782 | 100 | 60 / 60 | plus | ABC25358 |
| JLOC1 | JLOC1_4261.1 | 900 | 8e-25 | 724 - 783 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC25358 | 300 | 3e-25 | 18 - 77 | 100 | 60 / 60 | minus | ABC25358 |
| Harvest35 | U35_25567 | 301 | 3e-25 | 225 - 284 | 100 | 60 / 60 | plus |
Contig Sequence (301 bp)
>U35_25567 301 Hv_44K_v2 TGGTGATACTAATGGGAGATGTTTCATGTGTGGGTGGGTTGTGGGGGGAGGTGTTTCATG TGTGGGTGGGTGTGGGGTGGGTGGGTGTTTCATGTGTGGGTGGGTGTGTGGGGAGATGTT TCATGTGTGGGTGGGTGTGGGGGGAGAGGTTTCATGTGTGGGTGGGTGGGTGTGGGGTGA TAGTGGTCCGATATGTTTGACTGCGTCGTTAGAAAGTATTGTAGGTGTATCTTCATTTAG TTAGCTCTGTCTTCAAAGTTGATGTGATTCGTTACATTGTTGGTAAAAAAAAAAAAAAAA A
Homology of Contig U35_25567 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |