barSeed - Barley Seed Development Database

Probe CUST_35876_PI390587928

Source Contig U35_37540

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35876_PI390587928	Hv_44K_v2	TTTGAGGCGTATGCTGATTGATGAATACATTATACCTATTTTGAGATGAATTCCCTCGTT	73	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63358.2	866	2e-24	735 - 794	100	60 / 60	plus	ABC11746 ABC25902
JLOC1	JLOC1_41487.2	829	8e-25	716 - 775	100	60 / 60	plus
Harvest21	ABC11746	1399	3e-25	1275 - 1334	100	60 / 60	plus	ABC11746
Harvest35	U35_37540	633	3e-25	74 - 133	100	60 / 60	minus
Harvest35	U35_4399	1385	3e-25	1275 - 1334	100	60 / 60	plus

Contig Sequence (633 bp)

>U35_37540 633 Hv_44K_v2
TTTTTTTTTTTTTTTTTATGCCAGACATGATTATTGAACTATAATGTTTAATGGTTTCTA
TACAATGTAATATAACGAGGGAATTCATCTCAAAATAGGTATAATGTATTCATCAATCAG
CATACGCCTCAAACAGAGAAACCATGAATCACATGATCAGCTAAAGTTGGCATACATTGT
TACAATCATCTCAACAGATAGTGTACAGAGAGTGATGCAAGGGCTTTCAATCATCTTTCT
GATGCAGAGCACGAGGACTATTACCATTAAGTGCTGCATGATACACACGCTTTTCAGCCA
GCCCAAGATTAGAAAGAACTAAATTACCCTCAGTCGCAAGCAATTTTCTGACGTTGCTGG
CATAGACTGTAGGATCCTGCTTTTCTTGCTCAGAAGGATAGTATACAGGCAAGCGAACCA
CCTCCATGTAGTTTGCAAACTGACAGAGGAGCAAAAACACATGACGTGCCCCATCCATGG
AGTCCCAGGCTGGACTAAATCTCCTGTAAGGATATCTCAAAATTACAGGTTGCAATGGTG
CCCTTGCAAGAAAGGCTCCTGTCTCTAATGGGAGAAGGTATCCCCATTCGTAGTAGTACC
CTCAGGAAAGAGTACATCATAGAGGAATCTCGT

Homology of Contig U35_37540 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g28960.1	405	7e-63	protein\|acyltransferase, putative, expressed
Brachypodium v1_2	Bradi2g11730.2	375	9e-69
Arabidopsis v10	None