- Probe CUST_35872_PI390587928
- Source Contig U35_37545
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35872_PI390587928 | Hv_44K_v2 | CAAAAATTGCCTGGGATAAGAAGTGGCAGACTTTTAGAAAGGTGCCATGCTGGTCACATT | 455 | GeneList: floralwhite MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.168 | 0.304 | 1.699 | 1.985 | 1.184 | 1.104 |
| Raw | 5.537 | 18.771 | 93.205 | 169.764 | 36.540 | 36.368 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK359272 | 1953 | 2e-24 | 786 - 845 | 100 | 60 / 60 | plus | ABC43048 |
| MLOC | MLOC_39511.3 | 2196 | 2e-24 | 980 - 1039 | 100 | 60 / 60 | plus | ABC43048 |
| MLOC | MLOC_39511.4 | 1712 | 2e-24 | 1101 - 1160 | 100 | 60 / 60 | minus | ABC43048 |
| MLOC | MLOC_39511.2 | 1714 | 2e-24 | 834 - 893 | 100 | 60 / 60 | minus | ABC43048 |
| JLOC1 | JLOC1_25765.3 | 1742 | 8e-25 | 572 - 631 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_25765.2 | 1986 | 8e-25 | 816 - 875 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_25765.1 | 2842 | 8e-25 | 572 - 631 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_37545 | 620 | 3e-25 | 456 - 515 | 100 | 60 / 60 | plus |
Contig Sequence (620 bp)
>U35_37545 620 Hv_44K_v2 CTGGCAGTTCATAGCTCACCCGAAGAACCCAAAGTCAGGTGAGTACGGGTTCTCTGAGAG TGACATGGCGAGGTTCGGGTCTGGCGAGGGGCTACGGGTTTACAAGGCACTTGAGAAAGC GGCAGATCGTAAAGTCAAAATCAGGATCGCGCAGCACGCTGGGTTCGCCCCTGATTTCGA CCAAGAGAGTGCTAACCTCGCTGCAGGAAGGCCAAATGTTCAGAATGTAACCGTACTTTT TGAGGATTGGTGGGGATCCGGCGTTCTGCATGCAAAAGTCTGGATATCCGACAAAAAGGA TGTGTATATTGGATCTGCAAACAATGATTGGAAGTCCCTTACCCAGGTAAAGGAGCTGGG GATTTATTTCGTTGGTTGTCCACAGATAGCAAAAACTGTTGAAGTGTATTTTCAAAATCT TTGGACACTTTCAACACTCAATTCAACTACTTACACAAAAATTGCCTGGGATAAGAAGTG GCAGACTTTTAGAAAGGTGCCATGCTGGTCACATTTCCTACACCCCCGAACAAGATGCAG GTCACCTCTGCCACTTTCTGTCGATGTCCCATATGTCGACGGCTATCCATCACTTGCCAA TCCTGAACTGCTTGATGTTT
Homology of Contig U35_37545 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g44060.1 | 513 | 5e-118 | protein|phospholipase D. Active site motif family protein, expressed |
| Brachypodium v1_2 | Bradi1g30930.1 | 507 | 3e-124 | |
| Arabidopsis v10 | None |