barSeed - Barley Seed Development Database

Probe CUST_35870_PI390587928

Source Contig U35_37549

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35870_PI390587928	Hv_44K_v2	AAGTTAGTTTAGCCCGATTTACTTGATAAAGCATGGCACATCCTTTATGATGACTGTCTG	531	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14146.3	688	3e-21	600 - 659	97	58 / 60	minus	None
MLOC	MLOC_14146.1	1568	3e-21	1480 - 1539	97	58 / 60	minus	ABC12297 ABC12298
MLOC	MLOC_14146.2	1492	3e-21	1404 - 1463	97	58 / 60	minus	ABC12297 ABC12298
JLOC1	JLOC1_9643.2	1365	2e-21	30 - 89	97	58 / 60	plus
JLOC1	JLOC1_9643.1	1302	2e-21	28 - 87	97	58 / 60	plus
Harvest35	U35_37549	594	3e-25	532 - 591	100	60 / 60	plus

Contig Sequence (594 bp)

>U35_37549 594 Hv_44K_v2
GTTGAGGCAGGCCGTAGACATACTCGACGCAGCCTGATGATGAGTTTAATATTGGCTAAA
ACTATTCCTGATCAGGTTGAAATGCATGAATTGTTGGCCCTAGTTTACTATGATAGTGTT
CAAAATGTGGTACCTTTTTATGATCAAAGAGCTACATTGCCTGTGAAGGATGCAACATGG
GACATTAACTGCCGAAATTCGCTGAAGCAATTTGAGAAGGCTTTTGAACTCAAGTCTCAG
TGGCTCCATGCATTTTACCTTGGAAAGCTGTGTGAGAAACTGGGGCATTCACCTGCTAAG
GCATTTTCATACTACAAGAAAGCCATCACATTGAATCCAACTGCAGTTGACCCGGTTTAC
AGGATGCATGCATCACGTTTGAAATTACTTTATACCCGAGGGAAACAGAATCTTAATGTG
ATACAGGTAGTTGCTGATTACACATACAACCAGTCGACTAAAGAAAATGTCTTGAGCATG
CTGGGGTCCTCTGAACAGAATCATAGTGCTCTGGATGATGCAGAGGGAAATAAGTTAGTT
TAGCCCGATTTACTTGATAAAGCATGGCACATCCTTTATGATGACTGTCTGCAT

Homology of Contig U35_37549 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	AT4G32820.2	1872	9e-63	Tetratricopeptide repeat (TPR)-like superfamily protein \| chr4:15831679-15841454 REVERSE LENGTH=1872