- Probe CUST_35867_PI390587928
- Source Contig U35_49521
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35867_PI390587928 | Hv_44K_v2 | TGTGTCAATTGGTGCACGGTGTTATCTACTCCCTCTGTACCTAAATAATTATAGTTGGAG | 455 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.236 | 1.266 | 1.074 | 0.995 | 0.432 | 0.471 |
| Raw | 443.194 | 712.036 | 524.431 | 748.724 | 116.787 | 137.294 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_61666.1 | 2927 | 2e-24 | 2836 - 2895 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_40296.1 | 2970 | 8e-25 | 2813 - 2872 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC51282 | 518 | 3e-25 | 456 - 515 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_49521 | 518 | 3e-25 | 456 - 515 | 100 | 60 / 60 | plus |
Contig Sequence (518 bp)
>U35_49521 518 Hv_44K_v2 ACCTGATGTCATTGTACCTCTTCCGTCAACTGACCTAACGCAGAACATGGGATTGCAACC ATGCCCTATTCTAGCCCGCCGCCAAGTTGGCCGACCAAAGGAAAAGCCAGCTGATCCTCG TATTGCAATTAAAAGGGCAGTGCGCTGCAGCAGGTGCAAGGGCTATGGGCACAACAAAGC AACTTGCAAAGTCCCTATCACAACATAAGTTGTACTTGCTGTTATCAGTTCTCAGATGTA CATTATGTTGATAGTTGTGTTTCTTCTCCTTAATGAACTCTAGTGGCACTTCTATATGAA AAAAGAAAAATCATCATTCATCTGTCAATGTGCAGAACATTACCATGTCTGTGTGGATCA TAGCCCGAAATGTGTTGTACTGCCGCTGTGTGGCATCATTGGATATTTAGATGAAACATT TCCTAGTGGGCGGCATGTGGAAAGATTTTGAAGGTTGTGTCAATTGGTGCACGGTGTTAT CTACTCCCTCTGTACCTAAATAATTATAGTTGGAGAAG
Homology of Contig U35_49521 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |