barSeed - Barley Seed Development Database

Probe CUST_35865_PI390587928

Source Contig U35_49522

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35865_PI390587928	Hv_44K_v2	TGTTGTGAACAGTCTTGGCACATATTATATTGATGCTGGCCTTCATTCTTCAAAATTTGG	351	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358877	1154	2e-24	819 - 878	100	60 / 60	plus	ABC13841
Harvest21	ABC51285	593	3e-25	352 - 411	100	60 / 60	plus
Harvest35	U35_49522	593	3e-25	352 - 411	100	60 / 60	plus

Contig Sequence (593 bp)

>U35_49522 593 Hv_44K_v2
AAGGAGGTCCGGCGGGCGGCGCTCGAGCTGCATCGCGCCGGTAGGGGCCCCGTGGCGGAG
GTTGATGCCGGGGTGGACGCGCTCTAGTCTATTGAGAGGGAGCTCGGCGTGGGCGCCGGC
GTCGGCCGCAGCCCCGTCAAGCGCAGGCCCAAGCTATGAGATTCTCTGCGAGTTCTTCAA
CTGCTTTGAGAGCTCCACCCGGCTCCTCCGCATGAAGGGATCCAAGGCAACATTCCCCAA
CATCTGCGCTAGCATTCGGAACTTGGCTGAGAGGAGGTTTACCTATGGCCATCTCGCACA
GCTCAAGTACATCATGCCCGAGGCTATGGTACAGCGTGTTCATGCTAGTATTGTTGTGAA
CAGTCTTGGCACATATTATATTGATGCTGGCCTTCATTCTTCAAAATTTGGGTGTACACG
ATCTTTAGGAAGAAGAATCCCGAAGAAAACCCATTCCCACCAATCCGTTTTAGCTCACTG
GAGCTAGTTATGTGTATACTTAGTTGTATTTTATAGCTGAGTACCAGATTTGTACTATGT
GTGATTGTAGTGTACTTTGCATGTTCTTGTATGAAATATTATGTCTAATTGGC

Homology of Contig U35_49522 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None