barSeed - Barley Seed Development Database

Probe CUST_35864_PI390587928

Source Contig U35_13594

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35864_PI390587928	Hv_44K_v2	TTGCACCGATCAAACACAAACCGGTCTAGAAGTCAATTTCTAGAAAATCATCTAGCAAAA	501	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367045	2593	2e-24	2015 - 2074	100	60 / 60	plus	ABC21269
MLOC	MLOC_12820.2	996	2e-24	49 - 108	100	60 / 60	minus	None
MLOC	MLOC_12820.1	6095	2e-24	4231 - 4290	100	60 / 60	minus	ABC18244 ABC21269
JLOC1	JLOC1_8618.1	2307	8e-25	1238 - 1297	100	60 / 60	plus
Harvest21	ABC26479	595	3e-25	502 - 561	100	60 / 60	plus
Harvest35	U35_13594	597	3e-25	502 - 561	100	60 / 60	plus

Contig Sequence (597 bp)

>U35_13594 597 Hv_44K_v2
AGAAGATATCCAAACTTCTTAATAAGCGATTTTCGACACCGGTCTGGCTAAAGGTTAGCT
ATCCCATCCAACATGAACTATTTCTCGTTCATTGATCATTCTGCCATTTCTATTTTTTGC
TCATGCTTGTGTTCTGTATATTCAACCAAAACAGCACAAGGAACCACGGGAAGTTAACAT
GTTTGTTGATCTACTTCTCCTAGAGGTTTGTTCAGTTTCTTATCCTATTACTATTATATA
TTGAACAATAGGATACCGTGCCACTCTACTTGAGTTTAAAACTGATGCTTACATTTCATG
CTCACTACTGCATATGACTGCCATCTCACGTTGGAAGGGTTTTTCTTACTAACACAGTAA
TAAGTGTTTCTCATCCTGCAGTTCAATGGCATAGTATCTGAAGTCAAGCAGATTTTACCT
GGTTTAGTCCGACGGCATCGGCATTCTGATAGCACCGGCAGCACAACTTCCTCTAGAAGC
AATCCAATGCGAGAAGAGATGTTGCACCGATCAAACACAAACCGGTCTAGAAGTCAATTT
CTAGAAAATCATCTAGCAAAATTATTCGAACAGAAAATGGAAATATTCACCAAACTT

Homology of Contig U35_13594 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None