- Probe CUST_35860_PI390587928
- Source Contig U35_49525
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35860_PI390587928 | Hv_44K_v2 | GTGTTGATTGCATCATGGCAATCACTGCTCCAGAGCAAATTGTTAATTTCAACGGATTGT | 357 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 5.067 | 5.696 | 2.567 | 0.771 | 0.409 | 0.291 |
| Raw | 113.574 | 193.697 | 73.220 | 34.095 | 5.631 | 3.290 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_40009.1 | 1047 | 4e-23 | 974 - 1033 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC51289 | 420 | 3e-25 | 358 - 417 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_49525 | 420 | 3e-25 | 358 - 417 | 100 | 60 / 60 | plus |
Contig Sequence (420 bp)
>U35_49525 420 Hv_44K_v2 CTCCAGGAAGAAGCACATCTCAACACCTGCTTCAAGCACTTCATGCTCTTTACATGGGAA TTTCAGTTAATTGACAGGGCAGAGCTAGCTCCTCTCAGGGAGCTGATCGAGTCCATACTA GTGGGACACTAGCTGAGAAGACAATTGAAGCTTTGATTAAAGAACTGATGAGGCAAAAGC ACAAAGATATCATTTTTCTTTTGACGTTTAAGTTAGTTAGTTTCCCCAGCTTGTTCATGC GCACAATTGCGCTTGTCTTTTTGTGATGATGTTAGACTTGGGTATGGACTACGTTCATCT ACATTTTAGAGATAGGTTAGCCAGTGCTCGTGTATGTACTCAGATTCTCCCAAGCAGGTG TTGATTGCATCATGGCAATCACTGCTCCAGAGCAAATTGTTAATTTCAACGGATTGTCAT
Homology of Contig U35_49525 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |