- Probe CUST_35857_PI390587928
- Source Contig U35_49527
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35857_PI390587928 | Hv_44K_v2 | ACGTGATACGTTGACATGTGAACACTGAACAGACTCGAGGATTCAGATGCACAATGTAAG | 334 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.514 | 1.533 | 1.024 | 0.900 | 0.396 | 0.580 |
| Raw | 1557.743 | 2435.600 | 1419.890 | 2048.255 | 312.427 | 491.405 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_5537.1 | 1249 | 3e-21 | 1112 - 1165 | 100 | 54 / 54 | plus | None |
| JLOC1 | JLOC1_3568.1 | 1552 | 2e-21 | 1097 - 1150 | 100 | 54 / 54 | plus | |
| Harvest21 | ABC51292 | 397 | 3e-25 | 335 - 394 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_49527 | 397 | 3e-25 | 335 - 394 | 100 | 60 / 60 | plus |
Contig Sequence (397 bp)
>U35_49527 397 Hv_44K_v2 ATATGCAAGTCCTTCAAGATGGATTGCTGCCTGACCAATGATGATGCATTTGTTGTCGGT GGATCCGAGGACGGCTTCGTTTTCTTCTGGGAGTTGGTGGATGCACCTATTGTTGCGACT TTCCGAGCACATAGCTCTGTGGTGACCAGCGTCAGTTATCACCCAACAAAGACCTGCATG TTGACATCATCTGTCGATGGCACCATTCGTGTTTGGACCTGAAGATAGGAATTGCTGATG TGTGTTATTCCCTACAGATGCGCCCATGACAGTATTCTCCCTATGACCCATCTATAAAGT TCCAAGTATTCAGAAGCATAATGTGTACTATTGCACGTGATACGTTGACATGTGAACACT GAACAGACTCGAGGATTCAGATGCACAATGTAAGAAG
Homology of Contig U35_49527 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |