barSeed - Barley Seed Development Database

Probe CUST_35850_PI390587928

Source Contig U35_25573

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35850_PI390587928	Hv_44K_v2	TTGGATTTCTGCAGTCATGTTGAAGTCCAATGATATCTTGCGCAAGGAGACCGCTCTCAA	91	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_46721.2	959	7e-23	163 - 222	98	59 / 60	plus	ABC11698
MLOC	MLOC_46721.1	816	7e-23	163 - 222	98	59 / 60	plus	ABC11698
Harvest21	ABC24388	431	3e-25	92 - 151	100	60 / 60	plus
Harvest35	U35_25573	431	3e-25	92 - 151	100	60 / 60	plus

Contig Sequence (431 bp)

>U35_25573 431 Hv_44K_v2
GCCAAATACTGCGGAGAGTTGTTGGTCAGAAGATGATGGCGAGTTCCTCATTCCAATAGA
GTTTATATCGTGTAGGTTTCTTTGTGATGATTTGGATTTCTGCAGTCATGTTGAAGTCCA
ATGATATCTTGCGCAAGGAGACCGCTCTCAAGGCTACACGGTTGGGGGAGCGACGCTGCC
GGTGTCATGTGGGGCTTCGGTTTCGGTCAATGCCAACGACTGCGATGCCTCACCATGGCT
ACAGGTTGAAACGTCGTGCTGCGGCTTCGTCTTCCTTCCTGTTTGGTCCGGAGGAAACTT
TGGATCCCGGGTCTTCCGGATCAAGCGATGGTGGCATGCAACGTCGCATTCCCTGGATGG
GGCTTCGTCTTTGAGCTTGCCTTTCTAGGGGACTGGTGGCTCTGAAAACCATCTCACTCA
ACTGTTGCTCT

Homology of Contig U35_25573 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None