barSeed - Barley Seed Development Database

Probe CUST_35846_PI390587928

Source Contig U35_25579

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35846_PI390587928	Hv_44K_v2	AACAAGGCTGTTGTCAGTAGGGCTGAAAAAGAACTAGCATTTTCCTTGGCCTTTGCCAGA	354	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364743	4030	2e-24	3094 - 3153	100	60 / 60	plus	ABC32264
MLOC	MLOC_78242.1	1030	2e-24	98 - 157	100	60 / 60	plus	None
JLOC1	JLOC1_52148.1	1037	8e-25	41 - 100	100	60 / 60	plus
Harvest35	U35_25579	557	3e-25	355 - 414	100	60 / 60	plus

Contig Sequence (557 bp)

>U35_25579 557 Hv_44K_v2
GGCGAATTGGGCCCTTTCCATGATGCTCGAGCGGCCGCTCCATATCAATGTCAGTACGGG
CAGATGTCTATGGATGATAAGATTCTGATTGAGCTGGAAAGTATTGGCATTTGTCTGGAG
ACAGTGCCAAATGTAGATGATGAAGGGGATGAGGACATCAATAAAATGATTTCGGAACTG
AGGAGAAGGCTACACGATCAGCTGAAGGAAAAGAAATACGGATTGCATAAGTTAGATAGA
GCAATTCAAGATACAAAAAGTATCGAGGAGAGGAGCTTAGAGCAACATGCACTGAACAAA
CTGGTTGAAAGCGCATACAGTAAACTTCAGGGTACGCGAGCTGGTTCTCGCCACAACAAG
GCTGTTGTCAGTAGGGCTGAAAAAGAACTAGCATTTTCCTTGGCCTTTGCCAGACGCACC
CTTGCCCGATGCCAGAGATTCGAGGGAACGAAGAGGAGCTGCTTCAGAAAGCCTTCTCTT
TGGAGCTTGCTATCTGCACCCTTCCCAATCAGCGACGCGAAATCCACAGAAGGTGTTACA
ACAAGATCGAAAAAGAG

Homology of Contig U35_25579 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g01690.1	1211	1e-63	protein\|expressed protein
Brachypodium v1_2	Bradi2g39470.1	1146	8e-74
Arabidopsis v10	None