- Probe CUST_35831_PI390587928
- Source Contig U35_49536
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35831_PI390587928 | Hv_44K_v2 | TCCCCTTATTTACAAGGGTGTGCTAATCCGATTGCAGATTGCTGATGTATACAATTATTG | 457 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.076 | 1.334 | 1.168 | 0.955 | 0.398 | 0.310 |
| Raw | 346.789 | 689.208 | 517.088 | 666.725 | 100.023 | 81.315 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_60206.1 | 2055 | 2e-24 | 577 - 636 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_39236.1 | 1624 | 8e-25 | 189 - 248 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC51305 | 520 | 3e-25 | 458 - 517 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_49536 | 520 | 3e-25 | 458 - 517 | 100 | 60 / 60 | plus |
Contig Sequence (520 bp)
>U35_49536 520 Hv_44K_v2 TACAGAGCGAGGGAATCAATGCAGTTTGCGGGGCACAGGCCGTCAGGGTGGATGTTGGTT TGTCGAGGGGATGTGGTAATGGGCTGCCGGAGGTGCTCGAGATCAATGGTGGTGGATCAG AGGTGAGGGTGATCACAACAGATCCAACAGAGGCCTGGCAGTACCGGAAGCAGAAGCCGG AGAAATCTGCCACGACATTGGAGAAGAAAGGGGAGGTAAAGGATGGACTTGCATTGTTGG TAAGGGAGAGCAATGTATTGAAAGGTGTAGAAGCTAAGGCTTAGTTTAGGGGTAACTTGA GGACAGAGATTATTTTGCCAACTCTTAGTTCAATTGAATTAACATGCATAACTGGGCGTA ACTCCGGTTAGAGGTGGGAGGCATCAGTTGAAGGTAATGTTGGTTGATTCAATATGGTTA TCCACGGTAGAAAGGAAAGCAACCTTGATTTATCAATTCCCCTTATTTACAAGGGTGTGC TAATCCGATTGCAGATTGCTGATGTATACAATTATTGGCC
Homology of Contig U35_49536 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi4g20750.1 | 415 | 1e-52 | |
| Arabidopsis v10 | None |