barSeed - Barley Seed Development Database

Probe CUST_35823_PI390587928

Source Contig U35_25585

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35823_PI390587928	Hv_44K_v2	AGCTAATATACTATGCTCTGAAAATTGCAAGTGTAGGGATTGCAAGAACTTTGACGGGAG	739	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.873	1.188	1.620	1.320	0.761	0.773
Raw	22.902	44.104	56.400	64.905	14.581	16.360

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373983	2094	2e-24	794 - 853	100	60 / 60	plus	None
MLOC	MLOC_54333.2	1484	2e-24	459 - 518	100	60 / 60	plus	ABC05048
MLOC	MLOC_54333.1	2239	2e-24	459 - 518	100	60 / 60	plus	ABC05048
JLOC1	JLOC1_34969.2	5711	8e-25	99 - 158	100	60 / 60	plus
JLOC1	JLOC1_34969.1	5891	8e-25	267 - 326	100	60 / 60	plus
Harvest21	ABC22486	802	3e-25	740 - 799	100	60 / 60	plus
Harvest35	U35_25585	802	3e-25	740 - 799	100	60 / 60	plus

Contig Sequence (802 bp)

>U35_25585 802 Hv_44K_v2
GCCCGCCGCGAGTGCCAGTGCCCGCGGTTTCCACGCAGCCGCCGATTAAGAAGCTGGTCA
GGCAGCTCGACTTCAACTACGGGAACCCTGCCATGGCGGCCGCCGCCGCCGCCGTTTCCC
GGTCGGTGCCGCCGAGGGCGCTGCAGGTCGGGTACCCGCAGCCGCACCAGCTGAGGGCGG
CGTTGCCCATGGGGGTGCCGCATCAGCTGCAGCCGCGGGGGCTGCCCGTGATGCGGCCGC
ATCAGATGGTGCATGCGCAGCTGCCGCGGCCGGCACTGCCGATGGCAATGCCCGTGCCCG
TGCCGCAGGCTCGGTCGGCCCTATCGCAGCCAGTACAGCGCCCGCCGGTGGCCGTTCCCT
TGAAGCCAGAGTCACCAAAACCACGTGGACGGCTGTATGATGGGAAAGATGGCACACCAA
CGAAGAAGAAGTGCTGCAATTGTCGGCACTCCAAATGTTTGAAGCTGTACTGTGAATGTT
TTGCATCTGGTATTTATTGCGATGGTTGCAACTGCACCAATTGTTTTAATAACGTTGAGA
ATGAGGTGGCTAGGCGTGAAGCTATAGAGGCTACACTGGAGCGCAATCCAGACGCGTTCA
GACCTAAGATTGGGAGTAGCCCACACACAAATCGGAATAATATGGAGGTAGCTGGTGATC
TCCCTTTAATAGGGAAGCATAATAAAGGGTGCCACTGCAAGAAGTCAGGATGCCTCAAGA
AATACTGCGAGTGCTTCCAAGCTAATATACTATGCTCTGAAAATTGCAAGTGTAGGGATT
GCAAGAACTTTGACGGGAGTGA

Homology of Contig U35_25585 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g55580.2	620	8e-142	protein\|tesmin/TSO1-like CXC domain containing protein, expressed
Brachypodium v1_2	Bradi2g50540.2	599	1e-151
Arabidopsis v10	AT4G29000.1	603	2e-82	Tesmin/TSO1-like CXC domain-containing protein \| chr4:14293957-14296602 FORWARD LENGTH=603