barSeed - Barley Seed Development Database

Probe CUST_35818_PI390587928

Source Contig U35_37562

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35818_PI390587928	Hv_44K_v2	CATTATGTTCTTTCATTGTTCTGACCCTTTTGACATAGGATCTGATCCCGTTTGTAAAAA	346	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62551.1	1848	2e-24	1705 - 1764	100	60 / 60	plus	ABC06705
JLOC1	JLOC1_40939.1	1908	8e-25	1695 - 1754	100	60 / 60	plus
Harvest21	ABC06705	1718	3e-25	1615 - 1674	100	60 / 60	plus	ABC06705
Harvest35	U35_37562	450	3e-25	347 - 406	100	60 / 60	plus
Harvest35	U35_13855	1727	3e-25	1644 - 1703	100	60 / 60	plus

Contig Sequence (450 bp)

>U35_37562 450 Hv_44K_v2
GGAGAACGGAGAGCATGGTCTCCAACTGAATGCCGCAGCCCTGTCTCCGATCCGATCCCC
CTCGCGGCGCCCTTCCTTTCCGCCATACTTCCTTCCACTTGTGATTACGCCCGGACCTTA
GAAACGAACAGTGGGAACCTTTGCTGCACCTCATTCAATAAATCATGATGATAGTACGAA
ATTCCTTTTTTTCCTTCTCACCGTGTCGTTCAAGGAGGGGCGACGAGCGAGCCAGTGCGA
CGACGGTCCCGGTCTGGCCCTGGACCTGGACCGAGTCATGAGTTCACTCACTAGTCGGCA
GTTGATAATTATCTTCTCCTTTGCGACCGCCGGTCTCCTCCAGACACATTATGTTCTTTC
ATTGTTCTGACCCTTTTGACATAGGATCTGATCCCGTTTGTAAAAAAAATAAAAAAAATC
ATACCCTTCTCCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_37562 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None