- Probe CUST_35812_PI390587928
- Source Contig U35_49542
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35812_PI390587928 | Hv_44K_v2 | TTCCTTGTCAACTAACCATTGCTAAGTTTGTGTTGAGAAGGCCGGCGCTAATGACGTTTG | 288 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.653 | 1.360 | 1.096 | 0.905 | 0.395 | 0.446 |
| Raw | 871.330 | 1142.118 | 797.611 | 1023.137 | 161.078 | 196.542 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_70530.1 | 1585 | 2e-24 | 1370 - 1429 | 100 | 60 / 60 | plus | ABC14852 |
| MLOC | MLOC_70530.2 | 1530 | 2e-24 | 1327 - 1386 | 100 | 60 / 60 | plus | ABC14853 |
| JLOC1 | JLOC1_46807.2 | 1647 | 8e-25 | 1367 - 1426 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_46807.1 | 1651 | 8e-25 | 1371 - 1430 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC51316 | 357 | 3e-25 | 289 - 348 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_49542 | 357 | 3e-25 | 289 - 348 | 100 | 60 / 60 | plus |
Contig Sequence (357 bp)
>U35_49542 357 Hv_44K_v2 GCGGAGGCTGTCCTGGAAGGAGGCCACACAGGAGTTATCAGGACCATATGCCCAGCTGTA AGCAGTCTTGAGAGCCTTGGCCAAAACAGGGGTATCTTTGGGTGGACAGGAGGCGAGGAT GGCCGTCTATGTTGCTGGCGTTCTGATGACGTAGCTGCGACAAAGAAGTCGTGGGTCTCC AGTAGCCTTGTATCGCGTGTAGAGAAGAAAAACAGAAGCCGACATCAACCCTACTGACCG TCCTGCTAAGATGGATGTCCGGCCTCTGCTAACCCATCCATATGAAATTTCCTTGTCAAC TAACCATTGCTAAGTTTGTGTTGAGAAGGCCGGCGCTAATGACGTTTGGTCCCTGAA
Homology of Contig U35_49542 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |