barSeed - Barley Seed Development Database

Probe CUST_35797_PI390587928

Source Contig U35_37571

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35797_PI390587928	Hv_44K_v2	TTCCAGAACTCTAAACAGGTTGTGCTCCATGTCTGATTCAATGGAAAAAGATAGATAGAA	575	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.793	1.746	1.152	0.861	0.461	0.492
Raw	1466.840	2217.337	1305.753	1497.899	286.971	331.096

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355657	2294	2e-24	2229 - 2288	100	60 / 60	plus	ABC13549
MLOC	MLOC_19244.1	1094	2e-24	1030 - 1089	100	60 / 60	plus	ABC13549
JLOC1	JLOC1_13352.2	1160	8e-25	1025 - 1084	100	60 / 60	plus
JLOC1	JLOC1_13352.1	1165	8e-25	1030 - 1089	100	60 / 60	plus
Harvest21	ABC33272	638	3e-25	576 - 635	100	60 / 60	plus
Harvest21	ABC13549	859	1e-23	797 - 857	98	60 / 61	plus	ABC13549
Harvest35	U35_37571	638	3e-25	576 - 635	100	60 / 60	plus
Harvest35	U35_20103	894	3e-25	797 - 856	100	60 / 60	plus

Contig Sequence (638 bp)

>U35_37571 638 Hv_44K_v2
CACGAGGCCTCGTGCCGCAGTTGTAGCGCTTGTGTACCAGGATTTCAAGACATTGCTGCG
AGAAGATTCCATGGACTACGTACTGTATACTTCTGCCACGGTCCAGAAGAAGCGTCCAAC
TCCAAGAAGTGCGTCGAAAGTTAGAAGGCCGGTGGCTGTTACAAGAGGACGTGGTGGTGG
TGGTGGTGGTCGTGGTCGTGGTCGTGGTGGTGATGATGACGATGACACTGATGATGATGA
CTGGACTGGCGGGCCGAGAGTGCTGGAGTTCGGCGCTCAGGCAGTGACTGGTGGCCGAGT
AACGAGACAAAGGGTCCAAGTATGACTGGTGATTGTGCTCTGTACATTGTAGGGAAGTTT
ATAGCTGACTGACAGGCAGGGGACATAGGTCGTCATTTAGGGCTCATACCATCACTGATG
ATGATACCATCACTATTCAGTGGTAGTCGAGATTCTAGTATATAGAAGCAGAAAGGGAAG
GGAGATAGCTTTACCTACTTAGAGCCATTAACTTGTAGTACTCCTTTTCTTGCTGTGCCC
ATTTTATTATTTTTTTGTACTTTTGTGCTGGGCTTTTCCAGAACTCTAAACAGGTTGTGC
TCCATGTCTGATTCAATGGAAAAAGATAGATAGAAAGG

Homology of Contig U35_37571 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None