barSeed - Barley Seed Development Database

Probe CUST_35786_PI390587928

Source Contig U35_49558

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35786_PI390587928	Hv_44K_v2	GCACTTTGAAGTTACTTTAGAAGTCTGTACAATAACAACATACCAAATGCCTAATGGTAC	365	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372669	1180	2e-24	1089 - 1148	100	60 / 60	plus	None
MLOC	MLOC_77080.1	1138	2e-24	193 - 252	100	60 / 60	minus	None
JLOC1	JLOC1_51409.1	1095	8e-25	151 - 210	100	60 / 60	minus
Harvest21	ABC51346	442	3e-25	366 - 425	100	60 / 60	plus
Harvest35	U35_49558	442	3e-25	366 - 425	100	60 / 60	plus

Contig Sequence (442 bp)

>U35_49558 442 Hv_44K_v2
GGTCAGAGCCGGGAGGGTGTGTTACCGGCGGGGTGGTGCGCCGCAGGGCGGCATGATAGA
AGGGATTCCATGTGGGGTTTGTCCCAGGATCGATGAGTGCTCGCCGGATGGGGTCATCTC
ACCACCCACTTGTGTCTACTACAAGAAATGGCTGCAGATGGACTTCTAGGCCGCGAGTCC
TCTTCGGCATGTGTATTGTGCTGGGATGAATTGGTGAATCGTCGTTAGGATACACTTGTG
GGATTACCGCACTTCTGATCGTATGGTGTTATTTTTGTGGTCTAGGATGTGGTTGTCATG
CCAGGTGCATACCTTATTTGAGTATTTATACTGATAATCAGTTACATAGCTATTGTGTAT
TGTTTGCACTTTGAAGTTACTTTAGAAGTCTGTACAATAACAACATACCAAATGCCTAAT
GGTACATATCTTAAATGGATTG

Homology of Contig U35_49558 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None