barSeed - Barley Seed Development Database

Probe CUST_35783_PI390587928

Source Contig U35_1568

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35783_PI390587928	Hv_44K_v2	TTTGCTTGGTAATGCTTGGTTGAATCATCATCAGAAACGTTTCCATTCTGTTTGAATCAA	1197	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.968	2.281	1.187	0.770	0.222	0.267
Raw	63.174	117.189	51.965	54.221	2.767	6.874

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_51447.1	1779	3e-24	1311 - 1369	100	59 / 59	plus
Harvest35	U35_1568	1272	3e-25	1198 - 1257	100	60 / 60	plus

Contig Sequence (1272 bp)

>U35_1568 1272 Hv_44K_v2
GCTTGCGTTCCTTCTCCCTTCCCCAGTGCAGAATCCAAACCTTACCCACGCACACGCACT
TTACGACTCACGAAGCAAAGCGAAACCGCAAAGCGCTCTTCCGGCAGACTCACGAAGCAA
AGCGAAACCGCAAAGGACTCTTCCGGCAGAGCATGCGCGTTGCTGCGACGCGGCCCGTCT
CCTCCGCCCCCGTTGCCCTCCTCGCCGCTCTAGCCCTCCTCTTCCTCGTCGGCTCCGCCT
CGCTCGCCATCGGAACCATGGCTAGCCACGTCCTCGGCGGCAAGAGCGAGAACCCCGCTG
CGGCCAACAGCCTAGAGACCGACGGCCTCGCCCGCTTCGCCGTCGACGAACACAACAAGC
GCGAGAACGCGCTGCTGGAGTTCGTGCGGGTCGTGGAGGCCAAGGAGCAGACGGTGGCCG
GCACGCTGCACCACCTCACTCTCGAGGCGCTCGAGGCCGGGCGGAAGAAGGTGTACGAGG
CCAAGGTCTGGGTCAAGCCGTGGCTCGACTCCAAGGAGCTGCAGGAGTTCCGCCACACCG
GGGACGCCACCTCCTTCACCATCTCCGACCTCGGCGCCAAGAGAGGGGGACATGAGCCTG
GATGGCGTGATGTGCCTGTGCATGATCCTGTAGTCAAAGATGCTGCAAGCCATGCTGTGA
AATCAATCCAGGAGAGGTCGAATTCCCTTTTCCCGTATGAACTTATTGAAATCGTTCGCG
CAAAGGCTGAGGTTGTTGAAGACTTCGCCAAATTTGATATCGTCATGAAACTGAAGAGAG
GGACAAAGGAGGAGAAAATGAAAGCCGAGGTGCATAAGAACCTTGAGGGAGCTTTTGTGC
TGAACCAGATGCAGCCGGAGCATGACGAATCTAGCAGCCAGTGAATCTGACTTGTTAAGC
TCACAGTAATGTAGTTTGTATTAAGAAATAAACAGTAAACCTGTCTCTACCTGCATATTA
TGCTTTCTGCACCGGCTTGGTTGTTGAATGCGGCACGATGGAACTCTGTTTCTTACTAGC
TGAACATTACTTGGTTGGTGTTAATGGTGGAATGTGTAACCAATCTCGTAACTCAGGGTA
CTGTTGGCTGCCATATACACTGTCAATTTCGGTTACTCTGTGATATACACTGTCAATTTG
GGTTACTCGATAGTGTAGAGTGCTAGGTAAGATAATGGTGGAGTATGTTCATAGTTATTT
GCTTGGTAATGCTTGGTTGAATCATCATCAGAAACGTTTCCATTCTGTTTGAATCAAAAA
AAAAAAAAAAAA

Homology of Contig U35_1568 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g16430.1	251	1e-128	protein\|cysteine proteinase inhibitor precursor protein, putative, expressed
Brachypodium v1_2	Bradi2g10140.1	171	2e-58
Arabidopsis v10	AT3G12490.2	234	2e-87	\| Symbols: ATCYSB, ATCYS6, CYSB \| cystatin B \| chr3:3960523-3961876 REVERSE LENGTH=234