barSeed - Barley Seed Development Database

Probe CUST_35780_PI390587928

Source Contig U35_1571

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35780_PI390587928	Hv_44K_v2	CATTGTTGTGAACTTTCAGTTAAAGGAATAAGAGTGCATCCGCCTTCAGGCATGAAAAAA	2442	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.696	1.396	1.198	0.862	0.341	0.360
Raw	884.113	1143.448	851.616	934.127	134.502	153.732

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357530	3342	2e-24	3123 - 3182	100	60 / 60	plus	ABC05096
MLOC	MLOC_5639.2	1372	2e-24	1310 - 1369	100	60 / 60	plus	ABC05096
JLOC1	JLOC1_3641.1	1468	8e-25	1310 - 1369	100	60 / 60	plus
Harvest21	ABC05096	2520	3e-25	2443 - 2502	100	60 / 60	plus	ABC05096
Harvest35	U35_1571	2520	3e-25	2443 - 2502	100	60 / 60	plus

Contig Sequence (2520 bp)

>U35_1571 2520 Hv_44K_v2
TCCGCCGGGGCCGCGCTGCAGTACGGGATCGACAAGGACTTCTCCAACGAGTCACGCCAT
GTCATCTTTTACGACATGGGCTCAGGCAGCACCTACGCCGCGCTCGTCTACTACTCGTCC
TACAGCGCCAAGGAATTCGGGAAGACGGTGTCTGTCAACCAGTTCCAGGTTAAGGATGTC
AGATGGAACTCCAAACTTGGAGGCCTTGAAATGGAAATGCGTTTGGTAAACTATTTTGCT
GATCAGTTTAACAAGCAGCTTGGCAATGGGGATGACATCCGTCAGTCTCCTAAAGCAATG
GCTAAGTTGAAGAAGCAAGTCAAGCGCACCAAAGAAATTCTGAGTGCAAATACTGCTGCT
CCGATCTCAGTTGAATCTCTATATAACGATATCGATTTCAGGAGCACAATAACTCGTGAA
AAATTTGAAGAGCTTTGTGAAGATTTATGGGAGCAGGCTCTGACTCCAATTAAAGATGTG
CTTGCCCAGTCAGGCATGAAAATTAGTGACATCTATGCTGTAGAGCTAATAGGAGGAGCT
ACCAGGGTACCGAAACTGCAGGCTAAGCTGCAGGAATTCCTGGGACGGAGTGAGCTAGAT
AAGCACCTTGATGCTGATGAAGCAATTGTTCTTGGTGCCTCACTGCATGCTGCTAATCTA
AGTGATGGGATTAAGTTGAACCGTAAGTTGGGGATGATTGACGGTTCTACTTATGGTTTC
GTGTTTGAAATAGATGGCCCAGATTATGTCAAAGATGAAAGTACTGATCAAGTACTGGTG
CCAAGGATGAAAAAAATGCCGATAAAGTTATTCAGGTCAATCAAACATACTAAGGACTTT
GATGTGTCTCTTAGCTATGACAAAGCTTCTGAGTTGCCCCCAGGTGTTTTATCACACAAG
TTTGCGGATTATGCTATATCAGGCCTGACAGAAACCACTGAAAAGTATGGAAGCCGCAAT
TTATCTGCACCCATCAAAGCAAATCTACATTTTTCTTTGAGTAGAAGTGGAATTATTTCT
CTTGATAGGGCAGAAGCAGTGATTGAGATAACTGAATGGGTTGAAGTTCCAAAGAAGAAC
GTAACACTAGAGACTAATACCACCGATCAGACTTTGTCTGCTGAATCAGGAACATCTGAT
AGTACAACGGATAGTAAGGAGAATTCTAGTTCAGGAAGTGATGCTGATAATTCTAGCACT
ACCAATGATGAGAGCAATGTGCAAGATACTATTACAGAGAAGGTGCTGAAGAAAAGAACC
TTCAGGGTTCCATTGAAGGTCACTGAAAAAACAGCTGGTGCTGCATCAATCCTTTCAAAG
GAGCTGTATTCTGAGGCAAAAAGTAGGTTAGATGTACTTAATAAGAAGGATGCTGAACGG
AGGAGAACTGCTGAACTGAAAAATAACCTAGAGTCTTACATATACTCTATGAAGGAAAAG
TTGGAGGAAAGCACAGATATGTTGACCGTCTCAACTGAACAGGAGAGGGAATCTTTTACA
GAAAAACTCAGTGAGGTGCAGGATTGGCTGTATATGGATGGTGAAGAGGCTCAAGCAAAC
GAATTTCAAGAGCGCCTTGATCAGCTTAAGGCCATGGGCGACCCAATTCTTTTCAGAATG
AGTGAGTTAAAAGCCCGACCAGCAGCTTGCGGAAGTGCTCGATTATATCTTACTGAGCTA
CAAAAGATCGTTAAGAACTGGGAGACAAGCAAACCATGGCTTCCAAAAAAGAGAGTAGAT
GAGGTCGTAAGTGAAGCAGATAAACTGAAAGCTTGGTTGGAGGAGAAGGAAGCCCTACAG
AAGAGCACCCCTGTCCACAGCTTGCCTGCTTTCACATCTGAAGAGGTCTATAAGAAAGTT
TTAGCCCTACAAGATAAGGTCTCTAGTGTCAATAGGATTCCAAAGCCAAAACCCAAGGTT
GAGAAGAAACCTCCAAAGGAAGACGCTAACAAGGACAAGACGGACTCTTCAGAATCTGCA
TCCAGCGAGCCTGAGCCTGAGTCCACCGAGAAGTCGTCGGAATCAGATGCCCCGGAAAAG
ACTAACGATTCAGAACCAGAATCTCATGATGAGTTGTGATTATTAGGATCAGCTTTTGAT
CCCCCTGGGAGAGATACTGCTCAATATACTCCGAGAAGATAGTTTGTACCACAGTTTTGT
TTGACGGCCGAAAGACGAGGTTTGTGTAGGAATTCGCGGCAGGCTAGATGCTATATGGGC
GAGAAGAATTTGATATAAATCCCTGTATAGCAGTATTGTGGTCTCTAGGGCATATGCTGT
CAAGATAGCGCCTTGAAAGGCTTAGTTGTCAGGACTGAGAAGACTTTGTAGCTGCATTGT
TGTACTGAAACTCATTTATATTTTGATAACAGCTACTATAGAGATTTCATGAAAAAAAAA
AAAAAAAATGTACCTTTTAGCTCTTTCATACTGTCTATCACGCATTGTTGTGAACTTTCA
GTTAAAGGAATAAGAGTGCATCCGCCTTCAGGCATGAAAAAAAAACAAACAAAAAAAAAA

Homology of Contig U35_1571 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g48110.1	903	protein\|DnaK family protein, putative, expressed
Brachypodium v1_2	Bradi3g53100.1	887
Arabidopsis v10	AT4G16660.1	867	heat shock protein 70 (Hsp 70) family protein \| chr4:9377225-9381232 FORWARD LENGTH=867