- Probe CUST_35779_PI390587928
- Source Contig U35_1572
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35779_PI390587928 | Hv_44K_v2 | TGCGCGGTGTCGTTGTAATCTGAGTTTACTCTCTTCATCTGGATGTGCTCTGAATTACTG | 645 | GeneList: red MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.028 | 1.814 | 1.350 | 0.827 | 0.320 | 0.323 |
| Raw | 5677.077 | 15514.130 | 10014.533 | 9954.723 | 1289.113 | 1436.090 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK354993 | 737 | 2e-24 | 657 - 716 | 100 | 60 / 60 | plus | ABC04306 ABC04307 |
| MLOC | MLOC_37473.1 | 738 | 2e-24 | 528 - 587 | 100 | 60 / 60 | plus | ABC04306 ABC04307 ABC04309 |
| JLOC1 | JLOC1_24267.2 | 901 | 8e-25 | 680 - 739 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_24267.1 | 776 | 8e-25 | 555 - 614 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC04308 | 853 | 3e-25 | 657 - 716 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC04307 | 421 | 3e-25 | 342 - 401 | 100 | 60 / 60 | plus | ABC04307 |
| Harvest35 | U35_1573 | 886 | 3e-25 | 691 - 750 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1572 | 740 | 3e-25 | 646 - 705 | 100 | 60 / 60 | plus |
Contig Sequence (740 bp)
>U35_1572 740 Hv_44K_v2 CCCCTCCCCGCGTCCCGAGCTTCGCAGCTCCGCCGCCACACACCCCAACTCAAGCGCACA CCACACCACCCGGAGTTAGCTATGGCTCTCACAGGCGGCGCCGCCACCGCAGCGTGCATC CTCGTCCTCCTCGCGCTTGCCGGCGCGGCGGAGGCGGCCTCCTCGGCGCCGCCGCCGGTG GACTGCTCGGCATTGTTGGCTGGCCTCGCAGACTGCCTCGACTTTGTGTCGCCCGGCAGC AAGTCGAGCCAGCCTTCCAAGGCCTGCTGCGGGGAGGTGAAGACCTCCGTCGGCAGCCCC GCCGTGGTGGACTGCGTCTGCGCCGCCATGTTCTCCAAGCAAACGCAGTTGCCGATCAAC AAGACGCGGGTGTACGCTCTCCCCAACGCCTGCGGCACACCCGCCTCCGTCTTGAACCGG TGCCATGCTCTGCCGGGTGGTGCTCCTGCTGAAGCACCGGCGCCTTCACCGTCCAGTGGC AGCGCGGCCGCTTCGCCACCGAAGGCGAATGCGTCGGCGAGGTCTCCCGCAACCATTCTC GTGGCAACCGTCGCGGCTTCGCTGCTCGCCTTCTATTACCTCTGAGGACTGGCATCTCAG CCTCTCTCACGTGTTTATGTTGCACAAGACTTTGTGACTCTGTGTTGCGCGGTGTCGTTG TAATCTGAGTTTACTCTCTTCATCTGGATGTGCTCTGAATTACTGTTAAAAAAAAGTTTT TTTAAAAAAAAAAAAAAAAA
Homology of Contig U35_1572 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |