barSeed - Barley Seed Development Database

Probe CUST_35778_PI390587928

Source Contig U35_1573

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35778_PI390587928	Hv_44K_v2	TAGTAGTAAATTGCGATGTACCGTGGACTGAATATTGAGAAGTCGTTGCCTGCCAAAAAA	814	GeneList: bisque4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.700	2.655	1.726	0.864	0.418	0.461
Raw	1008.435	2402.908	1371.257	1088.032	178.270	220.847

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37473.1	738	3e-21	653 - 706	100	54 / 54	plus	ABC04306 ABC04307 ABC04309
JLOC1	JLOC1_24267.2	901	2e-21	805 - 858	100	54 / 54	plus
JLOC1	JLOC1_24267.1	776	2e-21	680 - 733	100	54 / 54	plus
Harvest21	ABC04308	853	3e-25	783 - 842	100	60 / 60	plus
Harvest21	ABC04309	235	8e-21	21 - 75	98	54 / 55	minus	ABC04309
Harvest35	U35_1573	886	3e-25	815 - 874	100	60 / 60	plus

Contig Sequence (886 bp)

>U35_1573 886 Hv_44K_v2
TCGAGCTCTGTTGGCCCTGGCCAGCATCCCAAGCCGGCCATCGCCAGTTCGCCAGACGCC
CGAGCCCGCTCGTTCACGCTCAAGCGCGCAGCAAGCACACCACCCAGAGCAGCCATGGCC
CTCGCCGGCGGCGCCACCACCGCGGCGTGCCTCCTCGTCCTCCTCGCGATCGCCCACGCC
GCGGGGGCGGCCAGCCACCACGCGCCGGCGGCGGCGCCGGCGCCGGACTGCACGGAGGCG
CTGATTGGCCTCGCCGACTGCCTCGACTACGTGTTGCCCGGCAGCAAGTCGGCTAAGCCT
TCCAAGACCTGCTGCGGGGAGGTGAAGACCGCCGTCGGCACCCCCGCCACCGTCAAGTGC
CTCTGCGAAGCCATGGCCGCCAAGGAGACGCCCATACCGATCAACATGACACGGGTGCTC
GCTCTCCCCGGCGCCTGCGGCGAACCCGCCTCCGTCTTGAACAAGTGCCATGCTCTGCCG
GGTGGTGCTCCTGCTGAAGCACCGGCGCCTTCACCGTCCAGTGGCAGCGCGGCCGCTTCG
CCACCGAAGGCGAATGCGTCGGCGAGGTCTCCCGCAACCATTCTCGTGGCAACCGTCGCG
GCTTCGCTGCTCGCCTTCTATTACCTCTGAGGACTGGCATCTCAGCCTCTCTCACGTGTT
TATGTTGCACAAGACTTTGTGACTCTGTGTTGCGCGGTGTCGTTGTAATCTGAGTTTACT
CTCTTCATCTGGATGTGCTCTGAATTACTGTTATTATCATGTTTTTTTTGAGAAAAAAAA
AATATTATCATGTACTCGTTGACTGAATATCGAGTAGTAGTAAATTGCGATGTACCGTGG
ACTGAATATTGAGAAGTCGTTGCCTGCCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_1573 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None