barSeed - Barley Seed Development Database

Probe CUST_35769_PI390587928

Source Contig U35_402

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35769_PI390587928	Hv_44K_v2	CCAGGGCGGGATAGTGATCCACAATTTCATGATAATTTGTAGTGTTGGAATAAAATAAAT	1208	GeneList: thistle1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	13.103	6.004	0.727	0.469	1.187	0.823
Raw	97.962	71.394	7.133	5.825	5.179	3.352

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366716	1209	2e-24	1099 - 1158	100	60 / 60	plus	ABC04632 ABC04633 ABC38188
MLOC	MLOC_77654.1	334	2e-24	134 - 193	100	60 / 60	plus	ABC04632 ABC04633
JLOC1	JLOC1_51779.1	377	8e-25	136 - 195	100	60 / 60	plus
Harvest21	ABC04633	1159	3e-25	39 - 98	100	60 / 60	minus	ABC04633
Harvest21	ABC43422	107	2e-21	7 - 66	97	58 / 60	minus	ABC43422
Harvest35	U35_402	1346	3e-25	1209 - 1268	100	60 / 60	plus

Contig Sequence (1346 bp)

>U35_402 1346 Hv_44K_v2
TAGAACGTGAAACCGTGCTGAGCTCCCAAGCAGTGGGAGGGGAAAGTGATCTCTGACCGC
GTGCCTGTTGAAGAATGAGCCGGCGACTCATAGGCAGTGGCTTGGTTAAGGGATCACAGC
ATCGGCATTGATTTCGATTCCAAGCTTCCAACACAACACAACACAACACAAGCCCAAAAT
GTTGCCGTCCAAGCCAGTCCTGGTGCTCCTCCTGCTCGCCGCCTCCACGGTGGCGACCGT
CGGCAAGCCTCTGCTCACCAAGGTAACCAAGGGCGGCGCCTCCACGGCGCTCTACACGGC
GCCCCTCAGCGCCGGCCGCCCACTGGTCTTTGACCTCTCCGCGCCGTCCATCACGACGCC
GTGCAGCGGGCAGACGACGACCGTGACGCTCTCGGCCAACTCCACCGACGGCAGCAACCC
GCTGTCCCCGGTCTCATTCGCCGCCACCGCCACCTGCGCGGCGGCACCCTCAGGCTCCGT
CGGAGTCTCGGGGCTCGCTCGCTCAGGCTCCTCGTTCCCGGCCCAGGTATCCAGCACGCA
GAAGGTGGCCAACTCGTTCGCGCTCTGCCTTCCAAGCGACGGCGTGGGCGCGGCCATCTT
CGGCGGCGGCCCGTTCTTCCTCGCGCCCCCGGCGGACCGGCCAGCCATCACCACGCTGCT
CTCCGACGGCGTCCCGCTCCGCCAGCCCTTCGCCGGGAACCCCGGATACTTCGTGTCGGC
GACCAACGGCATCGCCATCGACGGTACGCGCGTGGCCGTGTCCGGCTCCGGCGCGCTCGT
GGTCGGCCTCTCGAGCACGACCCCCTACGCGCAGCTCCGCAGCGACGTGTACCGCCCCTT
CATCACGGCCTTCGACCGCGCCATGGGACCCAGCGCGAAGGTCGCGGCGGTGGCGCCGTT
CGAGCTGTGCTACGACTCGTCCAAGCTGTCGCCGACGCTGTCGGGCTACTCCGTGCCGCA
GGTGGACGTGATGCTGGAGGGCGGGACGAACTTCACGGTGGTGGGGGGAAACTCCATGGC
GCAGGTGAACAGCGGCACGGCGTGCTTCGCGTTCGTCCAGTCTGGCAGCACGGGCGCGAC
GCCGGCGGTGGTGATCGGCGGGTTCCAGATGGAGAACAAGCTGGTGGTGCTCGACAACGA
CAAGAAGACGCTCAGCTTCACCCCGTACCTCCCGGCCAGGGGATTCTCCTGCAGCAACTT
CAACTTTACCAGGGCGGGATAGTGATCCACAATTTCATGATAATTTGTAGTGTTGGAATA
AAATAAATAAATTCACTGGAATATTAATTAAAAAAAAAAAAAAAAAGCGATAGCTTCCAA
ACTTTCGGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_402 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g71080.1	425	7e-78	protein\|xylanase inhibitor, putative, expressed
Brachypodium v1_2	Bradi2g02120.1	351	8e-135
Arabidopsis v10	None