barSeed - Barley Seed Development Database

Probe CUST_35763_PI390587928

Source Contig U35_1582

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35763_PI390587928	Hv_44K_v2	AAACTACTTGGCTACAAGAACTTCGCTGAGGTAAGCATGGCTCGGAAAATGGCAACTGTT	999	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.117	1.269	1.461	1.248	0.808	0.695
Raw	327.339	452.862	578.220	747.137	175.660	166.041

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368463	2528	2e-24	1108 - 1167	100	60 / 60	plus	ABC04070
MLOC	MLOC_62492.4	1961	2e-24	551 - 610	100	60 / 60	plus	ABC04070
MLOC	MLOC_62492.5	1881	2e-24	551 - 610	100	60 / 60	plus	ABC04070
MLOC	MLOC_62492.6	2123	2e-24	551 - 610	100	60 / 60	plus	ABC04070
MLOC	MLOC_62492.3	2162	2e-24	677 - 736	100	60 / 60	plus	ABC04070
MLOC	MLOC_62492.1	2169	2e-24	763 - 822	100	60 / 60	plus	ABC04070
MLOC	MLOC_62492.2	2143	2e-24	744 - 803	100	60 / 60	plus	ABC04070
JLOC1	JLOC1_40891.2	1869	8e-25	552 - 611	100	60 / 60	plus
JLOC1	JLOC1_40891.1	2050	8e-25	552 - 611	100	60 / 60	plus
Harvest21	ABC04070	2549	3e-25	1000 - 1059	100	60 / 60	plus	ABC04070
Harvest35	U35_1582	1716	3e-25	1000 - 1059	100	60 / 60	plus

Contig Sequence (1716 bp)

>U35_1582 1716 Hv_44K_v2
CTCCTCCTCGCTCACTCCGCCCGCCGCCTCTCCCGGAACCCTAGCCCCCTCCCTGCCCGC
ATCCTCTCCCTCCTCCCCGCCTCCTCCCCGCTCCGCGCCTTCTGCCCCCTCCGCGCCCGC
CCCTCCCGCGCCGCCATCTGCTCCGCCTACTCCACCGCCTCCGACGCCATGGCGGACGCT
GACAACAGCAACAACCCGCTGCTCGCCGACTTCGACTTCCCGCCCTTCGACCGCGTCGAA
CCCTCCCACGTCCGCCCCGGGATCCGCGCGCTCCTCGCCCGCCTCGAGGGCGAGCTGGAG
GAGCTCGAGAAGGGCGTGGAGCCGGCGTGGGAGCGCCTCGTCCACCCGCTCGAGCGCATC
GTCGACAGGCTCGACGTCGTCTGGAACGTCGTCGACCACCTCAAGGCCGTCAAGGACTCG
CCCGACCTCCGCTCCGCCGTCGAGGACGTCCAGCCCGAGAAAGTGAAATTCTACCTGAGA
CTGGGGCAGAGCAAGCCTATCTACGAGGCCTTCAACGCCATCAGGAATTCTTCAGACTGG
GACAGCCTCAGCGACGCCCGCAAGCGTGTCGTCGAAGGCCAAATAAAGGATGCTGTTCTT
GGTGGAGTTGCGCTTGAGGATGAGCAGAGAGAGATATTTAATCAAATCCAACAGGAACTT
GAAAAACTGTCAGAGAAATTCAGTGAAAATGTGTTGGATGCAACAAAGAAATTTGAGAAA
TTGGTTACTGACAAGAAAGAAATTGATGGTTTACCTGCCTCAGCTCTTGGCTTGGCAGCA
CAGACTGCTGTTTCAAAGGGACATGAAAATGCTTCAGCTGAAAATGGACCTTGGATGATC
ACACTAGACGCACCAAGCTTCACGGCTGTCATGCAACATGCTAAGAACAGGGCTCTCCGT
GAAGAAGTATATCGTGCTTATCTAACCCGTGCATCAAGCGGTGATCTTGATAACACTGAT
ATCATAAGTCAGATTCTGAAGTTGAGGCTAGAGAAGGCTAAACTACTTGGCTACAAGAAC
TTCGCTGAGGTAAGCATGGCTCGGAAAATGGCAACTGTTGACCGGGTGCAGGAGCTTCTT
GAGAAAATCCGTGCTGCTTCCTGGGATCATGCTGTCCAAGATATGGAAGATCTAAAAGCC
TTTGTGAAAGATTCTGGTTCTGCAGAAGCCAATGATCTAGCACACTGGGATCTTAACTTC
TGGAGTGAACGACTGCGGGAATCTAAATATGACATCGATGAGGAAGGACTGCGTCCTTAC
TTTGCACTGCCCAAGGTTATGGATGGCCTCTTCAGTCTTGCAAATAAGCTCTTTGGAATA
ACCGTTGAAGCTGCAGATGGGTTGGCTCCTGTTTGGAACAGTGACGTTAAATTTTATTGT
GTCAAAGATTCTTCCAATAGCCCTGTTGCTTATTTTTACTTTGACCCATACTCAAGACCA
TCTGAAAAGCGTGGTGGGGCTTGGATGAACGTCGTCTTTTCTCGTAGCAGTGTGCTAGCT
CGCAATGGGGCTTCTGTAAGGCTGCCTGTTGCCCATATGGTCTGTAATCAGATGCCACCA
GTTGGCGATAAGCCCAGTCTTATGACCTTCCGTGAGGTTGAAACCGTGTTCCATGAATTT
GGTCACGCGCTGCAGCATATGCTTACCAGACAAGATGAAGCCTTTGTTGCTGGTATCAGT
GGAATTGAATGGGATGCTGTAGAGTTACCCTCTCAG

Homology of Contig U35_1582 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g58340.1	771	protein\|oligopeptidase, putative, expressed
Brachypodium v1_2	Bradi3g60550.1	768
Arabidopsis v10	AT5G65620.1	791	Zincin-like metalloproteases family protein \| chr5:26221951-26225784 FORWARD LENGTH=791