barSeed - Barley Seed Development Database

Probe CUST_35756_PI390587928

Source Contig U35_409

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35756_PI390587928	Hv_44K_v2	TAATGCATGACTACTTAACCGGGGGATTCACCGCAAATACTACTTTGGCTCACTATTGCC	143	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.499	4.019	1.045	1.110	0.666	0.687
Raw	32064.600	30307.233	7170.673	12442.160	2456.773	2844.493

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61558.1	620	2e-23	1 - 58	100	58 / 58	minus	None
JLOC1	JLOC1_40230.1	654	1e-23	1 - 58	100	58 / 58	minus
Harvest21	ABC36552	121	6e-22	1 - 57	98	56 / 57	plus
Harvest35	U35_409	814	3e-25	144 - 203	100	60 / 60	plus
Harvest35	U35_136	1785	3e-25	1093 - 1152	100	60 / 60	plus

Contig Sequence (814 bp)

>U35_409 814 Hv_44K_v2
TCCTCGAGCATTGTTGGGCTACTGGTATAAATCACAGGCCGAAACCGGTGAAATCAAGGG
GCATTACTTGAATGCGACTGCGGGTACATGTGAAGAAATGATTAAGAGAGCTGTATTTGC
GAGAGAATTAGGGGTTCCTATTGTAATGCATGACTACTTAACCGGGGGATTCACCGCAAA
TACTACTTTGGCTCACTATTGCCGCGAGGAGGGACCGAGAGGCCCAACAAGCAGAGCAAG
GATCTCAGTGAGAGAGAGAGAGAGAGAGAAGGGAGGTGGCGTCGGCGAGCGTGGTGGCCG
CGGCGGCGGTGGTGGCAGCGCTGGCGGCGTTCTGCGCGACGGACCCGCTGCGGCTGGGCT
CCATGGTGGACTTCCCGGGCTTCGAGGCGCACCCGGTGGAGCTCCCGGACGCGGCGGAGA
TGCCCCCGCACGCGGACGCGGGCGAGCGGCTGCGCGGCGCGGAGATCCGGTTCCGCGGCG
AGGTGCAAGGCCCCGAGAGCGTCGCCTTCGACCCGCGCGGCCGCGGGCCGTACACGGGCG
TCGCCGACGGCCGGGTCCTCGTCTGGGACGGCGCGCGCTGGGCCTACTTCGCGCACGCCT
CGCCGGCCTGGACCGCCGACCGCTGCGGCGGGCCCAAGGCGTCCCCCACGGAGTACCTCA
GGGACGAGCACGTCTGCGGCCGCGCGCTCGGCATCCGGTTCGACAAGCGGACGGGGGACC
TCTACATCGCCGACGCCTACTTCGGCCTCTCCAAGGTCGGGCCCGAGGGCGGGCTGGCCA
CGCCGCTCGCCACGGAGGCCGAGGGCGTGCGCTT

Homology of Contig U35_409 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g53950.1	481	4e-93	protein\|strictosidine synthase, putative, expressed
Brachypodium v1_2	Bradi1g08480.1	398	3e-103
Arabidopsis v10	AT5G22020.1	395	1e-56	Calcium-dependent phosphotriesterase superfamily protein \| chr5:7287878-7289357 REVERSE LENGTH=395