barSeed - Barley Seed Development Database

Probe CUST_35754_PI390587928

Source Contig U35_1587

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35754_PI390587928	Hv_44K_v2	GGCACCTCATGTGCATTTGGAATGTTAGCCGTAAGCTCATCCGTGATTCGGGATAAAAAA	1145	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.563	4.423	1.455	0.657	0.513	0.459
Raw	35.495	104.810	27.049	17.928	3.420	4.244

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_27248.1	667	6e-21	615 - 667	100	53 / 53	plus
Harvest35	U35_1587	1216	3e-25	1146 - 1205	100	60 / 60	plus

Contig Sequence (1216 bp)

>U35_1587 1216 Hv_44K_v2
TGTGTATCGATATCAGAACCAGGTGTTCCGTTTCCTTTTATCTTTCCCCAGTAGCTGCCA
TGCCAATAACAAGAAGATCGTCAAAACATATGCACTCACTTCAAGTAGCTCTTTGCGCTC
CAGACTTTCCTACTGATGAGAAGTTATGTCTAGCTGCGTCGGACGGTTGTCCGTCCTTTG
CGGTTATCTTATTGCGCTTGCTCTACTGCTGCACGCACCCACGGTGCTTGGGATTGATTG
ATGGCTGGCTATCTGACGGTGTACTGCACGCAGGACTACAATGTGACGCTGGTGTACTAC
CTGTCGCACTACCTGGTGGACATCGTGAGCGAGAAGGCCGGCCGCGTGCTCAAGCTCGAC
AAGATCGACGAGGGCCGCAACTGGCTCGGCGCCGACGTGCTCGTCTTCGACTCCTGGCAC
TGGTGGCCGCGCTCCGGCAAGGATCAACCCTGGGACTATATGCAGGAGGGAAGCCAGGTG
ATGAAGGACATGGACCGGACGGCGGCCTTCACCAAGGCGCTCAACACCTGGGCCGGATGG
GTGGACGCCAACCTCGTGCAGACCAGCACCAAAGTCTTCTTCCAGGGCATCTCTCCCTCT
CACTACAGGGGGCAAGAATGGGGCGCCTCGCCGAGGAGATCGTGCATGGGGGAGACGGAG
CTGCTGAACAGCACGGGGCCGTATCCCGGCGGCCCGATCCCGCAGCAGGCGGTCATCAGA
AACGCCCTCGCAAACATGGCGAAGCCGGTGTACCTGCTGGACTTCACCTACATGTCGCAG
CTGAGGAAGGACGCCCACCCCGGCAAGTACGGCGGCGTCTTCGGCCAGGACTGCACCCAC
TGGTGCATCGCCGGCCTGCCGGACACCTGGAACATCCTTTTCTACGCTGCGCTCACCGGC
CAAGATGGTTAAATTCGTTCGGATGTGTGTAGAATAGGTCAACAATCAGACCATATTTGA
AGATAGCGCATTGGTTTATAGGATTGGGAAGATACTTTCTTTTTGCTGCAACAAAGGCAT
AGAGGATTATCACAGTTGAAACAAAAATAGATATAGCATGGTGCCAATAGTCAAGGAGGG
CGTGATTGTTAAGTGATTTGTACTTATAAATATATATATATATAAGATTTAAAGCGGGGA
GCTCCGGCACCTCATGTGCATTTGGAATGTTAGCCGTAAGCTCATCCGTGATTCGGGATA
AAAAAAAAAAAAAAAA

Homology of Contig U35_1587 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g11810.2	377	2e-124	protein\|powdery mildew resistant protein 5, putative, expressed
Brachypodium v1_2	Bradi2g07000.1	378	2e-131
Arabidopsis v10	AT1G29050.1	380	4e-77	\| Symbols: TBL38 \| TRICHOME BIREFRINGENCE-LIKE 38 \| chr1:10136376-10139082 REVERSE LENGTH=380