barSeed - Barley Seed Development Database

Probe CUST_35752_PI390587928

Source Contig U35_1589

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35752_PI390587928	Hv_44K_v2	ATTGCCATCTCATGGTCACAAATCCTTCTGATTATGTAGAGGCATTTGGGAAAGCTGGTG	304	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.538	0.649	1.417	1.911	0.822	1.334
Raw	88.804	165.839	321.095	714.692	102.737	183.670

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56085.2	964	2e-24	308 - 367	100	60 / 60	plus	ABC04371
MLOC	MLOC_56085.3	952	2e-24	229 - 288	100	60 / 60	plus	ABC04371
MLOC	MLOC_56085.4	429	2e-24	75 - 134	100	60 / 60	plus	ABC04371
MLOC	MLOC_56085.1	2769	2e-24	2054 - 2113	100	60 / 60	plus	ABC04371
JLOC1	JLOC1_36249.3	2420	8e-25	1419 - 1478	100	60 / 60	plus
JLOC1	JLOC1_36249.2	1506	8e-25	505 - 564	100	60 / 60	plus
JLOC1	JLOC1_36249.1	1416	8e-25	415 - 474	100	60 / 60	plus
Harvest21	ABC04371	1027	3e-25	305 - 364	100	60 / 60	plus	ABC04371
Harvest35	U35_1589	1027	3e-25	305 - 364	100	60 / 60	plus
Harvest35	U35_34397	736	2e-22	676 - 735	97	58 / 60	minus

Contig Sequence (1027 bp)

>U35_1589 1027 Hv_44K_v2
GCGGAACGTCGCCCGCTTCCCCACTTTGGACCTCAACTACCGCCCAGCCCAGCGACCGCC
GGTCCGGTCCTCCAATCGGAAGCAACCAAACCAAGCATGGCGGCGGCGGCGGCGGCGGCG
GCGAAGATAGCGCCGTCCATGCTCTCGTCGGACTTCGCCAACCTCGCCTCGGAGGCCGAG
CGCATGGTCCGCCTCGGCGCCGACTGGCTCCACATGGACGTCATGGATGGGCACTTTGTT
CCTAATTTAACTATTGGAGCTCCAGTGATTGAGAGCTTGAGGAAGCACACCAAGGCGTAT
TTGGATTGCCATCTCATGGTCACAAATCCTTCTGATTATGTAGAGGCATTTGGGAAAGCT
GGTGCCTCAGGATTCACATTCCATATAGAAGTCACCAGAGATAACTGGAAAGAGCTCATC
CAAAGCATTAAAGCAAAGGGCATGCGGCCTGGTGTATCATTGAAGCCTGGTACTCCTGTG
GAGGATGTTTTCCCTCTGGTCGAAGCAGAAACCCCTGTAGAACTTGTTCTGGTGATGACG
GTTGAGCCTGGCTTCGGTGGCCAGAAGTTCATGCCGGAGATGATGGATAAGGTGCGCACG
CTGAGGAAGAAGTACCCGTCCCTCGACATAGAGGTGGACGGTGGCCTCGGTCCTTCCACC
ATCGACGTGGCCGCGTCGGCCGGCGCCAACTGCATCGTCGCCGGAAGCTCCGTGTTTGGA
GCCGCCGACCCCGGGCAGGTCATCTCGGCGCTGCGGAAGAGCGTCGAGGCGTCACAAATC
AAGGGCTGATCCGATCATCTGTAGCCTCGCACGCTCGGCTGTATTGTTTTGTTTCTGCTG
TAAACTAGTAGAACTCTGAACCACTCCGCACGTCGGTCTCAGTTTGCATGCAGTTCCGCA
ATCCGCACTGCAAACTGATGAGCGAGCGAGTCTGTGTCCCTGAATAAGATGTGCTCTTGG
CAACTTGTGAAAAAAAAAAAACACTTCCATTTTTTTGAGGCATATATTTAAAAAAAAAAA
AAAAAAA

Homology of Contig U35_1589 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g32810.2	215	6e-117	protein\|ribulose-phosphate 3-epimerase, putative, expressed
Brachypodium v1_2	Bradi4g34610.1	226	1e-146
Arabidopsis v10	AT3G01850.1	225	8e-128	Aldolase-type TIM barrel family protein \| chr3:300428-301987 REVERSE LENGTH=225